Suits F - Search Results

1

A high-throughput processing service for retention time alignment of complex proteomics and metabolomics LC-MS data.

Ahmad I, Suits F, Hoekman B, Swertz MA, Byelas H, Dijkstra M, Hooft R, Katsubo D, van Breukelen B, Bischoff R, Horvatovich P. Ahmad I, et al. Among authors: suits f. Bioinformatics. 2011 Apr 15;27(8):1176-8. doi: 10.1093/bioinformatics/btr094. Epub 2011 Feb 23. Bioinformatics. 2011. PMID: 21349866

2

Optimized time alignment algorithm for LC-MS data: correlation optimized warping using component detection algorithm-selected mass chromatograms.

Christin C, Smilde AK, Hoefsloot HC, Suits F, Bischoff R, Horvatovich PL. Christin C, et al. Among authors: suits f. Anal Chem. 2008 Sep 15;80(18):7012-21. doi: 10.1021/ac800920h. Epub 2008 Aug 21. Anal Chem. 2008. PMID: 18715018

3

Time alignment algorithms based on selected mass traces for complex LC-MS data.

Christin C, Hoefsloot HC, Smilde AK, Suits F, Bischoff R, Horvatovich PL. Christin C, et al. Among authors: suits f. J Proteome Res. 2010 Mar 5;9(3):1483-95. doi: 10.1021/pr9010124. J Proteome Res. 2010. PMID: 20070124

4

msCompare: a framework for quantitative analysis of label-free LC-MS data for comparative candidate biomarker studies.

Hoekman B, Breitling R, Suits F, Bischoff R, Horvatovich P. Hoekman B, et al. Among authors: suits f. Mol Cell Proteomics. 2012 Jun;11(6):M111.015974. doi: 10.1074/mcp.M111.015974. Epub 2012 Feb 7. Mol Cell Proteomics. 2012. PMID: 22318370 Free PMC article.

5

Chip-LC-MS for label-free profiling of human serum.

Horvatovich P, Govorukhina NI, Reijmers TH, van der Zee AG, Suits F, Bischoff R. Horvatovich P, et al. Among authors: suits f. Electrophoresis. 2007 Dec;28(23):4493-505. doi: 10.1002/elps.200600719. Electrophoresis. 2007. PMID: 18041038

6

A noise model for mass spectrometry based proteomics.

Du P, Stolovitzky G, Horvatovich P, Bischoff R, Lim J, Suits F. Du P, et al. Among authors: suits f. Bioinformatics. 2008 Apr 15;24(8):1070-7. doi: 10.1093/bioinformatics/btn078. Epub 2008 Mar 18. Bioinformatics. 2008. PMID: 18353791

7

A critical assessment of feature selection methods for biomarker discovery in clinical proteomics.

Christin C, Hoefsloot HC, Smilde AK, Hoekman B, Suits F, Bischoff R, Horvatovich P. Christin C, et al. Among authors: suits f. Mol Cell Proteomics. 2013 Jan;12(1):263-76. doi: 10.1074/mcp.M112.022566. Epub 2012 Oct 31. Mol Cell Proteomics. 2013. PMID: 23115301 Free PMC article.

8

Inversion of peak elution order prevents uniform time alignment of complex liquid-chromatography coupled to mass spectrometry datasets.

Mitra V, Smilde A, Hoefsloot H, Suits F, Bischoff R, Horvatovich P. Mitra V, et al. Among authors: suits f. J Chromatogr A. 2014 Dec 19;1373:61-72. doi: 10.1016/j.chroma.2014.10.101. Epub 2014 Nov 13. J Chromatogr A. 2014. PMID: 25482036

9

Proteogenomics: Key Driver for Clinical Discovery and Personalized Medicine.

Barbieri R, Guryev V, Brandsma CA, Suits F, Bischoff R, Horvatovich P. Barbieri R, et al. Among authors: suits f. Adv Exp Med Biol. 2016;926:21-47. doi: 10.1007/978-3-319-42316-6_3. Adv Exp Med Biol. 2016. PMID: 27686804 Review.

10

Pipelines and Systems for Threshold-Avoiding Quantification of LC-MS/MS Data.

Sánchez Brotons A, Eriksson JO, Kwiatkowski M, Wolters JC, Kema IP, Barcaru A, Kuipers F, Bakker SJL, Bischoff R, Suits F, Horvatovich P. Sánchez Brotons A, et al. Among authors: suits f. Anal Chem. 2021 Aug 17;93(32):11215-11224. doi: 10.1021/acs.analchem.1c01892. Epub 2021 Aug 6. Anal Chem. 2021. PMID: 34355890 Free PMC article.

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