Park PJ - Search Results

1

ChIP-chip versus ChIP-seq: lessons for experimental design and data analysis.

Ho JW, Bishop E, Karchenko PV, Nègre N, White KP, Park PJ. Ho JW, et al. Among authors: park pj. BMC Genomics. 2011 Feb 28;12:134. doi: 10.1186/1471-2164-12-134. BMC Genomics. 2011. PMID: 21356108 Free PMC article.

2

Comparative analysis of algorithms for identifying amplifications and deletions in array CGH data.

Lai WR, Johnson MD, Kucherlapati R, Park PJ. Lai WR, et al. Among authors: park pj. Bioinformatics. 2005 Oct 1;21(19):3763-70. doi: 10.1093/bioinformatics/bti611. Epub 2005 Aug 4. Bioinformatics. 2005. PMID: 16081473 Free PMC article.

3

High-resolution ChIP-chip analysis reveals that the Drosophila MSL complex selectively identifies active genes on the male X chromosome.

Alekseyenko AA, Larschan E, Lai WR, Park PJ, Kuroda MI. Alekseyenko AA, et al. Among authors: park pj. Genes Dev. 2006 Apr 1;20(7):848-57. doi: 10.1101/gad.1400206. Epub 2006 Mar 17. Genes Dev. 2006. PMID: 16547173 Free PMC article.

4

Normalization and experimental design for ChIP-chip data.

Peng S, Alekseyenko AA, Larschan E, Kuroda MI, Park PJ. Peng S, et al. Among authors: park pj. BMC Bioinformatics. 2007 Jun 25;8:219. doi: 10.1186/1471-2105-8-219. BMC Bioinformatics. 2007. PMID: 17592629 Free PMC article.

5

A sequence motif within chromatin entry sites directs MSL establishment on the Drosophila X chromosome.

Alekseyenko AA, Peng S, Larschan E, Gorchakov AA, Lee OK, Kharchenko P, McGrath SD, Wang CI, Mardis ER, Park PJ, Kuroda MI. Alekseyenko AA, et al. Among authors: park pj. Cell. 2008 Aug 22;134(4):599-609. doi: 10.1016/j.cell.2008.06.033. Cell. 2008. PMID: 18724933 Free PMC article.

6

Design and analysis of ChIP-seq experiments for DNA-binding proteins.

Kharchenko PV, Tolstorukov MY, Park PJ. Kharchenko PV, et al. Among authors: park pj. Nat Biotechnol. 2008 Dec;26(12):1351-9. doi: 10.1038/nbt.1508. Epub 2008 Nov 16. Nat Biotechnol. 2008. PMID: 19029915 Free PMC article.

7

Experimental design and data analysis for array comparative genomic hybridization.

Park PJ. Park PJ. Cancer Invest. 2008 Nov;26(9):923-8. doi: 10.1080/07357900801993432. Cancer Invest. 2008. PMID: 19034774 Review.

8

ChIP-seq: advantages and challenges of a maturing technology.

Park PJ. Park PJ. Nat Rev Genet. 2009 Oct;10(10):669-80. doi: 10.1038/nrg2641. Epub 2009 Sep 8. Nat Rev Genet. 2009. PMID: 19736561 Free PMC article. Review.

9

Quantized correlation coefficient for measuring reproducibility of ChIP-chip data.

Peng S, Kuroda MI, Park PJ. Peng S, et al. Among authors: park pj. BMC Bioinformatics. 2010 Jul 27;11:399. doi: 10.1186/1471-2105-11-399. BMC Bioinformatics. 2010. PMID: 20663215 Free PMC article.

10

rSW-seq: algorithm for detection of copy number alterations in deep sequencing data.

Kim TM, Luquette LJ, Xi R, Park PJ. Kim TM, et al. Among authors: park pj. BMC Bioinformatics. 2010 Aug 18;11:432. doi: 10.1186/1471-2105-11-432. BMC Bioinformatics. 2010. PMID: 20718989 Free PMC article.

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