Deng Y - Search Results

1

Predictive minimum description length principle approach to inferring gene regulatory networks.

Chaitankar V, Zhang C, Ghosh P, Gong P, Perkins EJ, Deng Y. Chaitankar V, et al. Among authors: deng y. Adv Exp Med Biol. 2011;696:37-43. doi: 10.1007/978-1-4419-7046-6_4. Adv Exp Med Biol. 2011. PMID: 21431544

2

Comparison of probabilistic Boolean network and dynamic Bayesian network approaches for inferring gene regulatory networks.

Li P, Zhang C, Perkins EJ, Gong P, Deng Y. Li P, et al. Among authors: deng y. BMC Bioinformatics. 2007 Nov 1;8 Suppl 7(Suppl 7):S13. doi: 10.1186/1471-2105-8-S7-S13. BMC Bioinformatics. 2007. PMID: 18047712 Free PMC article.

3

A novel gene network inference algorithm using predictive minimum description length approach.

Chaitankar V, Ghosh P, Perkins EJ, Gong P, Deng Y, Zhang C. Chaitankar V, et al. Among authors: deng y. BMC Syst Biol. 2010 May 28;4 Suppl 1(Suppl 1):S7. doi: 10.1186/1752-0509-4-S1-S7. BMC Syst Biol. 2010. PMID: 20522257 Free PMC article.

4

State Space Model with hidden variables for reconstruction of gene regulatory networks.

Wu X, Li P, Wang N, Gong P, Perkins EJ, Deng Y, Zhang C. Wu X, et al. Among authors: deng y. BMC Syst Biol. 2011;5 Suppl 3(Suppl 3):S3. doi: 10.1186/1752-0509-5-S3-S3. Epub 2011 Dec 23. BMC Syst Biol. 2011. PMID: 22784622 Free PMC article.

5

Batch Blast Extractor: an automated blastx parser application.

Pirooznia M, Perkins EJ, Deng Y. Pirooznia M, et al. Among authors: deng y. BMC Genomics. 2008 Sep 16;9 Suppl 2(Suppl 2):S10. doi: 10.1186/1471-2164-9-S2-S10. BMC Genomics. 2008. PMID: 18831775 Free PMC article.

6

ILOOP--a web application for two-channel microarray interwoven loop design.

Pirooznia M, Gong P, Yang JY, Yang MQ, Perkins EJ, Deng Y. Pirooznia M, et al. Among authors: deng y. BMC Genomics. 2008 Sep 16;9 Suppl 2(Suppl 2):S11. doi: 10.1186/1471-2164-9-S2-S11. BMC Genomics. 2008. PMID: 18831776 Free PMC article.

7

An ensemble learning approach to reverse-engineering transcriptional regulatory networks from time-series gene expression data.

Ruan J, Deng Y, Perkins EJ, Zhang W. Ruan J, et al. Among authors: deng y. BMC Genomics. 2009 Jul 7;10 Suppl 1(Suppl 1):S8. doi: 10.1186/1471-2164-10-S1-S8. BMC Genomics. 2009. PMID: 19594885 Free PMC article.

8

In vitro gene regulatory networks predict in vivo function of liver.

Deng Y, Johnson DR, Guan X, Ang CY, Ai J, Perkins EJ. Deng Y, et al. BMC Syst Biol. 2010 Nov 12;4:153. doi: 10.1186/1752-0509-4-153. BMC Syst Biol. 2010. PMID: 21073692 Free PMC article.

9

Cloning, analysis and functional annotation of expressed sequence tags from the Earthworm Eisenia fetida.

Pirooznia M, Gong P, Guan X, Inouye LS, Yang K, Perkins EJ, Deng Y. Pirooznia M, et al. Among authors: deng y. BMC Bioinformatics. 2007 Nov 1;8 Suppl 7(Suppl 7):S7. doi: 10.1186/1471-2105-8-S7-S7. BMC Bioinformatics. 2007. PMID: 18047730 Free PMC article.

10

Supervised learning method for the prediction of subcellular localization of proteins using amino acid and amino acid pair composition.

Habib T, Zhang C, Yang JY, Yang MQ, Deng Y. Habib T, et al. Among authors: deng y. BMC Genomics. 2008;9 Suppl 1(Suppl 1):S16. doi: 10.1186/1471-2164-9-S1-S16. BMC Genomics. 2008. PMID: 18366605 Free PMC article.

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