van Dijk WJ - Search Results

1

Enabling high-throughput ligation-independent cloning and protein expression for the family of ubiquitin specific proteases.

Luna-Vargas MP, Christodoulou E, Alfieri A, van Dijk WJ, Stadnik M, Hibbert RG, Sahtoe DD, Clerici M, Marco VD, Littler D, Celie PH, Sixma TK, Perrakis A. Luna-Vargas MP, et al. Among authors: van dijk wj. J Struct Biol. 2011 Aug;175(2):113-9. doi: 10.1016/j.jsb.2011.03.017. Epub 2011 Mar 29. J Struct Biol. 2011. PMID: 21453775

2

Ubiquitin-specific protease 4 is inhibited by its ubiquitin-like domain.

Luna-Vargas MP, Faesen AC, van Dijk WJ, Rape M, Fish A, Sixma TK. Luna-Vargas MP, et al. Among authors: van dijk wj. EMBO Rep. 2011 Apr;12(4):365-72. doi: 10.1038/embor.2011.33. Epub 2011 Mar 18. EMBO Rep. 2011. Retraction in: EMBO Rep. 2014 Jan;15(1):121. doi: 10.1002/embr.201470010 PMID: 21415856 Free PMC article. Retracted.

3

The differential modulation of USP activity by internal regulatory domains, interactors and eight ubiquitin chain types.

Faesen AC, Luna-Vargas MP, Geurink PP, Clerici M, Merkx R, van Dijk WJ, Hameed DS, El Oualid F, Ovaa H, Sixma TK. Faesen AC, et al. Among authors: van dijk wj. Chem Biol. 2011 Dec 23;18(12):1550-61. doi: 10.1016/j.chembiol.2011.10.017. Chem Biol. 2011. PMID: 22195557

4

Structure of USP7 catalytic domain and three Ubl-domains reveals a connector α-helix with regulatory role.

Kim RQ, van Dijk WJ, Sixma TK. Kim RQ, et al. Among authors: van dijk wj. J Struct Biol. 2016 Jul;195(1):11-8. doi: 10.1016/j.jsb.2016.05.005. Epub 2016 May 13. J Struct Biol. 2016. PMID: 27183903 Free article.

5

A conserved two-step binding for the UAF1 regulator to the USP12 deubiquitinating enzyme.

Dharadhar S, Clerici M, van Dijk WJ, Fish A, Sixma TK. Dharadhar S, et al. Among authors: van dijk wj. J Struct Biol. 2016 Dec;196(3):437-447. doi: 10.1016/j.jsb.2016.09.011. Epub 2016 Sep 17. J Struct Biol. 2016. PMID: 27650958 Free PMC article.

6

BAP1/ASXL1 recruitment and activation for H2A deubiquitination.

Sahtoe DD, van Dijk WJ, Ekkebus R, Ovaa H, Sixma TK. Sahtoe DD, et al. Among authors: van dijk wj. Nat Commun. 2016 Jan 7;7:10292. doi: 10.1038/ncomms10292. Nat Commun. 2016. PMID: 26739236 Free PMC article.

7

The nucleosome acidic patch plays a critical role in RNF168-dependent ubiquitination of histone H2A.

Mattiroli F, Uckelmann M, Sahtoe DD, van Dijk WJ, Sixma TK. Mattiroli F, et al. Among authors: van dijk wj. Nat Commun. 2014;5:3291. doi: 10.1038/ncomms4291. Nat Commun. 2014. PMID: 24518117 Free PMC article.

8

Mechanism of UCH-L5 activation and inhibition by DEUBAD domains in RPN13 and INO80G.

Sahtoe DD, van Dijk WJ, El Oualid F, Ekkebus R, Ovaa H, Sixma TK. Sahtoe DD, et al. Among authors: van dijk wj. Mol Cell. 2015 Mar 5;57(5):887-900. doi: 10.1016/j.molcel.2014.12.039. Epub 2015 Feb 19. Mol Cell. 2015. PMID: 25702870 Free PMC article.

9

Insert L1 is a central hub for allosteric regulation of USP1 activity.

Dharadhar S, van Dijk WJ, Scheffers S, Fish A, Sixma TK. Dharadhar S, et al. Among authors: van dijk wj. EMBO Rep. 2021 Apr 7;22(4):e51749. doi: 10.15252/embr.202051749. Epub 2021 Feb 23. EMBO Rep. 2021. PMID: 33619839 Free PMC article.

10

Nicotine and carbamylcholine binding to nicotinic acetylcholine receptors as studied in AChBP crystal structures.

Celie PH, van Rossum-Fikkert SE, van Dijk WJ, Brejc K, Smit AB, Sixma TK. Celie PH, et al. Among authors: van rossum fikkert se, van dijk wj. Neuron. 2004 Mar 25;41(6):907-14. doi: 10.1016/s0896-6273(04)00115-1. Neuron. 2004. PMID: 15046723 Free article.

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