Huang K - Search Results

1

Comparing multiple ChIP-sequencing experiments.

Ozer HG, Huang YW, Wu J, Parvin JD, Huang TH, Huang K. Ozer HG, et al. Among authors: huang th, huang k, huang yw. J Bioinform Comput Biol. 2011 Apr;9(2):269-82. doi: 10.1142/s0219720011005483. J Bioinform Comput Biol. 2011. PMID: 21523932 Free PMC article.

2

Comparative study on ChIP-seq data: normalization and binding pattern characterization.

Taslim C, Wu J, Yan P, Singer G, Parvin J, Huang T, Lin S, Huang K. Taslim C, et al. Among authors: huang k, huang t. Bioinformatics. 2009 Sep 15;25(18):2334-40. doi: 10.1093/bioinformatics/btp384. Epub 2009 Jun 26. Bioinformatics. 2009. PMID: 19561022 Free PMC article.

3

Using gene co-expression network analysis to predict biomarkers for chronic lymphocytic leukemia.

Zhang J, Xiang Y, Ding L, Keen-Circle K, Borlawsky TB, Ozer HG, Jin R, Payne P, Huang K. Zhang J, et al. Among authors: huang k. BMC Bioinformatics. 2010 Oct 28;11 Suppl 9(Suppl 9):S5. doi: 10.1186/1471-2105-11-S9-S5. BMC Bioinformatics. 2010. PMID: 21044363 Free PMC article.

4

RNA polymerase II binding patterns reveal genomic regions involved in microRNA gene regulation.

Wang G, Wang Y, Shen C, Huang YW, Huang K, Huang TH, Nephew KP, Li L, Liu Y. Wang G, et al. Among authors: huang k, huang th, huang yw. PLoS One. 2010 Nov 2;5(11):e13798. doi: 10.1371/journal.pone.0013798. PLoS One. 2010. PMID: 21072189 Free PMC article.

5

Enabling Data Analysis on High-Throughput Data in Large Data Depository Using Web-Based Analysis Platform - A Case Study on Integrating QUEST with GenePattern in Epigenetics Research.

Camerlengo T, Ozer HG, Yan P, Parvin J, Huang T, Huang K, Perez F, Teng M, Li L, Liu Y, Kurc T. Camerlengo T, et al. Among authors: huang k, huang t. Proceedings (IEEE Int Conf Bioinformatics Biomed). 2009 Nov 1;1-4(Nov 2009):392-395. doi: 10.1109/BIBM.2009.84. Proceedings (IEEE Int Conf Bioinformatics Biomed). 2009. PMID: 21151835 Free PMC article.

6

Transactional database transformation and its application in prioritizing human disease genes.

Xiang Y, Payne PR, Huang K. Xiang Y, et al. Among authors: huang k. IEEE/ACM Trans Comput Biol Bioinform. 2012 Jan-Feb;9(1):294-304. doi: 10.1109/TCBB.2011.58. Epub 2011 Mar 16. IEEE/ACM Trans Comput Biol Bioinform. 2012. PMID: 21422495 Free PMC article.

7

KIAA0101 interacts with BRCA1 and regulates centrosome number.

Kais Z, Barsky SH, Mathsyaraja H, Zha A, Ransburgh DJ, He G, Pilarski RT, Shapiro CL, Huang K, Parvin JD. Kais Z, et al. Among authors: huang k. Mol Cancer Res. 2011 Aug;9(8):1091-9. doi: 10.1158/1541-7786.MCR-10-0503. Epub 2011 Jun 14. Mol Cancer Res. 2011. PMID: 21673012 Free PMC article.

8

Analyzing ChIP-seq data: preprocessing, normalization, differential identification, and binding pattern characterization.

Taslim C, Huang K, Huang T, Lin S. Taslim C, et al. Among authors: huang k, huang t. Methods Mol Biol. 2012;802:275-91. doi: 10.1007/978-1-61779-400-1_18. Methods Mol Biol. 2012. PMID: 22130887

9

Integrated analysis identifies a class of androgen-responsive genes regulated by short combinatorial long-range mechanism facilitated by CTCF.

Taslim C, Chen Z, Huang K, Huang TH, Wang Q, Lin S. Taslim C, et al. Among authors: huang k, huang th. Nucleic Acids Res. 2012 Jun;40(11):4754-64. doi: 10.1093/nar/gks139. Epub 2012 Feb 16. Nucleic Acids Res. 2012. PMID: 22344698 Free PMC article.

10

A signal processing approach for enriched region detection in RNA polymerase II ChIP-seq data.

Han Z, Tian L, Pécot T, Huang T, Machiraju R, Huang K. Han Z, et al. Among authors: huang k, huang t. BMC Bioinformatics. 2012 Mar 13;13 Suppl 2(Suppl 2):S2. doi: 10.1186/1471-2105-13-S2-S2. BMC Bioinformatics. 2012. PMID: 22536865 Free PMC article.

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