Wang W - Search Results

1

Prediction of peptides binding to the PKA RIIalpha subunit using a hierarchical strategy.

Hou T, Li Y, Wang W. Hou T, et al. Among authors: wang w. Bioinformatics. 2011 Jul 1;27(13):1814-21. doi: 10.1093/bioinformatics/btr294. Epub 2011 May 17. Bioinformatics. 2011. PMID: 21586518 Free PMC article.

2

Proteome-wide detection of Abl1 SH3-binding peptides by integrating computational prediction and peptide microarray.

Xu Z, Hou T, Li N, Xu Y, Wang W. Xu Z, et al. Among authors: wang w. Mol Cell Proteomics. 2012 Jan;11(1):O111.010389. doi: 10.1074/mcp.O111.010389. Epub 2011 Oct 24. Mol Cell Proteomics. 2012. PMID: 22023807 Free PMC article.

3

Characterization of domain-peptide interaction interface: prediction of SH3 domain-mediated protein-protein interaction network in yeast by generic structure-based models.

Hou T, Li N, Li Y, Wang W. Hou T, et al. Among authors: wang w. J Proteome Res. 2012 May 4;11(5):2982-95. doi: 10.1021/pr3000688. Epub 2012 Apr 9. J Proteome Res. 2012. PMID: 22468754 Free PMC article.

4

Assessing the performance of the molecular mechanics/Poisson Boltzmann surface area and molecular mechanics/generalized Born surface area methods. II. The accuracy of ranking poses generated from docking.

Hou T, Wang J, Li Y, Wang W. Hou T, et al. Among authors: wang w, wang j. J Comput Chem. 2011 Apr 15;32(5):866-77. doi: 10.1002/jcc.21666. Epub 2010 Oct 14. J Comput Chem. 2011. PMID: 20949517 Free PMC article.

5

The identification of novel cyclic AMP-dependent protein kinase anchoring proteins using bioinformatic filters and peptide arrays.

McLaughlin WA, Hou T, Taylor SS, Wang W. McLaughlin WA, et al. Among authors: wang w. Protein Eng Des Sel. 2011 Mar;24(3):333-9. doi: 10.1093/protein/gzq106. Epub 2010 Nov 29. Protein Eng Des Sel. 2011. PMID: 21115539 Free PMC article.

6

Assessing the performance of the MM/PBSA and MM/GBSA methods. 1. The accuracy of binding free energy calculations based on molecular dynamics simulations.

Hou T, Wang J, Li Y, Wang W. Hou T, et al. Among authors: wang w, wang j. J Chem Inf Model. 2011 Jan 24;51(1):69-82. doi: 10.1021/ci100275a. Epub 2010 Nov 30. J Chem Inf Model. 2011. PMID: 21117705 Free PMC article.

7

Characterization of PDZ domain-peptide interaction interface based on energetic patterns.

Li N, Hou T, Ding B, Wang W. Li N, et al. Among authors: wang w. Proteins. 2011 Nov;79(11):3208-20. doi: 10.1002/prot.23157. Epub 2011 Sep 17. Proteins. 2011. PMID: 21928318 Free PMC article.

8

Computational analysis and prediction of the binding motif and protein interacting partners of the Abl SH3 domain.

Hou T, Chen K, McLaughlin WA, Lu B, Wang W. Hou T, et al. Among authors: wang w. PLoS Comput Biol. 2006 Jan;2(1):e1. doi: 10.1371/journal.pcbi.0020001. Epub 2006 Jan 27. PLoS Comput Biol. 2006. PMID: 16446784 Free PMC article.

9

Prediction of binding sites of peptide recognition domains: an application on Grb2 and SAP SH2 domains.

McLaughlin WA, Hou T, Wang W. McLaughlin WA, et al. Among authors: wang w. J Mol Biol. 2006 Apr 7;357(4):1322-34. doi: 10.1016/j.jmb.2006.01.005. Epub 2006 Jan 26. J Mol Biol. 2006. PMID: 16476443

10

On the detection of functionally coherent groups of protein domains with an extension to protein annotation.

McLaughlin WA, Chen K, Hou T, Wang W. McLaughlin WA, et al. Among authors: wang w. BMC Bioinformatics. 2007 Oct 16;8:390. doi: 10.1186/1471-2105-8-390. BMC Bioinformatics. 2007. PMID: 17937820 Free PMC article.

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