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Protein-DNA recognition triggered by a DNA conformational switch.
Bouvier B, Zakrzewska K, Lavery R. Bouvier B, et al. Among authors: lavery r. Angew Chem Int Ed Engl. 2011 Jul 11;50(29):6516-8. doi: 10.1002/anie.201101417. Epub 2011 May 30. Angew Chem Int Ed Engl. 2011. PMID: 21626631 No abstract available.
A systematic molecular dynamics study of nearest-neighbor effects on base pair and base pair step conformations and fluctuations in B-DNA.
Lavery R, Zakrzewska K, Beveridge D, Bishop TC, Case DA, Cheatham T 3rd, Dixit S, Jayaram B, Lankas F, Laughton C, Maddocks JH, Michon A, Osman R, Orozco M, Perez A, Singh T, Spackova N, Sponer J. Lavery R, et al. Nucleic Acids Res. 2010 Jan;38(1):299-313. doi: 10.1093/nar/gkp834. Epub 2009 Oct 22. Nucleic Acids Res. 2010. PMID: 19850719 Free PMC article.
Towards a molecular view of transcriptional control.
Zakrzewska K, Lavery R. Zakrzewska K, et al. Among authors: lavery r. Curr Opin Struct Biol. 2012 Apr;22(2):160-7. doi: 10.1016/j.sbi.2012.01.004. Epub 2012 Jan 30. Curr Opin Struct Biol. 2012. PMID: 22296921 Review.
Analyzing ion distributions around DNA.
Lavery R, Maddocks JH, Pasi M, Zakrzewska K. Lavery R, et al. Nucleic Acids Res. 2014 Jul;42(12):8138-49. doi: 10.1093/nar/gku504. Epub 2014 Jun 6. Nucleic Acids Res. 2014. PMID: 24906882 Free PMC article.
μABC: a systematic microsecond molecular dynamics study of tetranucleotide sequence effects in B-DNA.
Pasi M, Maddocks JH, Beveridge D, Bishop TC, Case DA, Cheatham T 3rd, Dans PD, Jayaram B, Lankas F, Laughton C, Mitchell J, Osman R, Orozco M, Pérez A, Petkevičiūtė D, Spackova N, Sponer J, Zakrzewska K, Lavery R. Pasi M, et al. Among authors: lavery r. Nucleic Acids Res. 2014 Oct 29;42(19):12272-83. doi: 10.1093/nar/gku855. Epub 2014 Sep 26. Nucleic Acids Res. 2014. PMID: 25260586 Free PMC article.
244 results