DeSantis TZ - Search Results

1

Impact of training sets on classification of high-throughput bacterial 16s rRNA gene surveys.

Werner JJ, Koren O, Hugenholtz P, DeSantis TZ, Walters WA, Caporaso JG, Angenent LT, Knight R, Ley RE. Werner JJ, et al. Among authors: desantis tz. ISME J. 2012 Jan;6(1):94-103. doi: 10.1038/ismej.2011.82. Epub 2011 Jun 30. ISME J. 2012. PMID: 21716311 Free PMC article.

2

Supervised classification of microbiota mitigates mislabeling errors.

Knights D, Kuczynski J, Koren O, Ley RE, Field D, Knight R, DeSantis TZ, Kelley ST. Knights D, et al. Among authors: desantis tz. ISME J. 2011 Apr;5(4):570-3. doi: 10.1038/ismej.2010.148. Epub 2010 Oct 7. ISME J. 2011. PMID: 20927137 Free PMC article. No abstract available.

3

A novel ecological role of the Firmicutes identified in thermophilic microbial fuel cells.

Wrighton KC, Agbo P, Warnecke F, Weber KA, Brodie EL, DeSantis TZ, Hugenholtz P, Andersen GL, Coates JD. Wrighton KC, et al. Among authors: desantis tz. ISME J. 2008 Nov;2(11):1146-56. doi: 10.1038/ismej.2008.48. Epub 2008 Sep 4. ISME J. 2008. PMID: 18769460 Free article.

4

An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea.

McDonald D, Price MN, Goodrich J, Nawrocki EP, DeSantis TZ, Probst A, Andersen GL, Knight R, Hugenholtz P. McDonald D, et al. Among authors: desantis tz. ISME J. 2012 Mar;6(3):610-8. doi: 10.1038/ismej.2011.139. Epub 2011 Dec 1. ISME J. 2012. PMID: 22134646 Free PMC article.

5

Accurate taxonomy assignments from 16S rRNA sequences produced by highly parallel pyrosequencers.

Liu Z, DeSantis TZ, Andersen GL, Knight R. Liu Z, et al. Among authors: desantis tz. Nucleic Acids Res. 2008 Oct;36(18):e120. doi: 10.1093/nar/gkn491. Epub 2008 Aug 22. Nucleic Acids Res. 2008. PMID: 18723574 Free PMC article.

6

NAST: a multiple sequence alignment server for comparative analysis of 16S rRNA genes.

DeSantis TZ Jr, Hugenholtz P, Keller K, Brodie EL, Larsen N, Piceno YM, Phan R, Andersen GL. DeSantis TZ Jr, et al. Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W394-9. doi: 10.1093/nar/gkl244. Nucleic Acids Res. 2006. PMID: 16845035 Free PMC article.

7

Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB.

DeSantis TZ, Hugenholtz P, Larsen N, Rojas M, Brodie EL, Keller K, Huber T, Dalevi D, Hu P, Andersen GL. DeSantis TZ, et al. Appl Environ Microbiol. 2006 Jul;72(7):5069-72. doi: 10.1128/AEM.03006-05. Appl Environ Microbiol. 2006. PMID: 16820507 Free PMC article.

8

Automated group assignment in large phylogenetic trees using GRUNT: GRouping, Ungrouping, Naming Tool.

Dalevi D, Desantis TZ, Fredslund J, Andersen GL, Markowitz VM, Hugenholtz P. Dalevi D, et al. Among authors: desantis tz. BMC Bioinformatics. 2007 Oct 18;8:402. doi: 10.1186/1471-2105-8-402. BMC Bioinformatics. 2007. PMID: 17949484 Free PMC article.

9

A framework for human microbiome research.

Human Microbiome Project Consortium. Human Microbiome Project Consortium. Nature. 2012 Jun 13;486(7402):215-21. doi: 10.1038/nature11209. Nature. 2012. PMID: 22699610 Free PMC article.

10

Structure, function and diversity of the healthy human microbiome.

Human Microbiome Project Consortium. Human Microbiome Project Consortium. Nature. 2012 Jun 13;486(7402):207-14. doi: 10.1038/nature11234. Nature. 2012. PMID: 22699609 Free PMC article.

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