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A common layer of interoperability for biomedical ontologies based on OWL EL.
Hoehndorf R, Dumontier M, Oellrich A, Wimalaratne S, Rebholz-Schuhmann D, Schofield P, Gkoutos GV. Hoehndorf R, et al. Among authors: dumontier m. Bioinformatics. 2011 Apr 1;27(7):1001-8. doi: 10.1093/bioinformatics/btr058. Epub 2011 Feb 21. Bioinformatics. 2011. PMID: 21343142 Free PMC article.
Relations as patterns: bridging the gap between OBO and OWL.
Hoehndorf R, Oellrich A, Dumontier M, Kelso J, Rebholz-Schuhmann D, Herre H. Hoehndorf R, et al. Among authors: dumontier m. BMC Bioinformatics. 2010 Aug 31;11:441. doi: 10.1186/1471-2105-11-441. BMC Bioinformatics. 2010. PMID: 20807438 Free PMC article.
Integrating systems biology models and biomedical ontologies.
Hoehndorf R, Dumontier M, Gennari JH, Wimalaratne S, de Bono B, Cook DL, Gkoutos GV. Hoehndorf R, et al. Among authors: dumontier m. BMC Syst Biol. 2011 Aug 11;5:124. doi: 10.1186/1752-0509-5-124. BMC Syst Biol. 2011. PMID: 21835028 Free PMC article.
Evaluation of research in biomedical ontologies.
Hoehndorf R, Dumontier M, Gkoutos GV. Hoehndorf R, et al. Among authors: dumontier m. Brief Bioinform. 2013 Nov;14(6):696-712. doi: 10.1093/bib/bbs053. Epub 2012 Sep 8. Brief Bioinform. 2013. PMID: 22962340 Free PMC article.
Mouse model phenotypes provide information about human drug targets.
Hoehndorf R, Hiebert T, Hardy NW, Schofield PN, Gkoutos GV, Dumontier M. Hoehndorf R, et al. Among authors: dumontier m. Bioinformatics. 2014 Mar 1;30(5):719-25. doi: 10.1093/bioinformatics/btt613. Epub 2013 Oct 24. Bioinformatics. 2014. PMID: 24158600 Free PMC article.
Ranking adverse drug reactions with crowdsourcing.
Gottlieb A, Hoehndorf R, Dumontier M, Altman RB. Gottlieb A, et al. Among authors: dumontier m. J Med Internet Res. 2015 Mar 23;17(3):e80. doi: 10.2196/jmir.3962. J Med Internet Res. 2015. PMID: 25800813 Free PMC article.
Special issue on bio-ontologies and phenotypes.
Soldatova LN, Collier N, Oellrich A, Groza T, Verspoor K, Rocca-Serra P, Dumontier M, Shah NH. Soldatova LN, et al. Among authors: dumontier m. J Biomed Semantics. 2015 Dec 17;6:40. doi: 10.1186/s13326-015-0040-2. eCollection 2015. J Biomed Semantics. 2015. PMID: 26682035 Free PMC article.
167 results