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FaST linear mixed models for genome-wide association studies.
Lippert C, Listgarten J, Liu Y, Kadie CM, Davidson RI, Heckerman D. Lippert C, et al. Among authors: listgarten j. Nat Methods. 2011 Sep 4;8(10):833-5. doi: 10.1038/nmeth.1681. Nat Methods. 2011. PMID: 21892150
Extensive HLA class I allele promiscuity among viral CTL epitopes.
Frahm N, Yusim K, Suscovich TJ, Adams S, Sidney J, Hraber P, Hewitt HS, Linde CH, Kavanagh DG, Woodberry T, Henry LM, Faircloth K, Listgarten J, Kadie C, Jojic N, Sango K, Brown NV, Pae E, Zaman MT, Bihl F, Khatri A, John M, Mallal S, Marincola FM, Walker BD, Sette A, Heckerman D, Korber BT, Brander C. Frahm N, et al. Among authors: listgarten j. Eur J Immunol. 2007 Sep;37(9):2419-33. doi: 10.1002/eji.200737365. Eur J Immunol. 2007. PMID: 17705138 Free PMC article.
Statistical resolution of ambiguous HLA typing data.
Listgarten J, Brumme Z, Kadie C, Xiaojiang G, Walker B, Carrington M, Goulder P, Heckerman D. Listgarten J, et al. PLoS Comput Biol. 2008 Feb 29;4(2):e1000016. doi: 10.1371/journal.pcbi.1000016. PLoS Comput Biol. 2008. PMID: 18392148 Free PMC article.
Rare HLA drive additional HIV evolution compared to more frequent alleles.
Rousseau CM, Lockhart DW, Listgarten J, Maley SN, Kadie C, Learn GH, Nickle DC, Heckerman DE, Deng W, Brander C, Ndung'u T, Coovadia H, Goulder PJ, Korber BT, Walker BD, Mullins JI. Rousseau CM, et al. Among authors: listgarten j. AIDS Res Hum Retroviruses. 2009 Mar;25(3):297-303. doi: 10.1089/aid.2008.0208. AIDS Res Hum Retroviruses. 2009. PMID: 19327049 Free PMC article.
Widespread impact of HLA restriction on immune control and escape pathways of HIV-1.
Carlson JM, Listgarten J, Pfeifer N, Tan V, Kadie C, Walker BD, Ndung'u T, Shapiro R, Frater J, Brumme ZL, Goulder PJ, Heckerman D. Carlson JM, et al. Among authors: listgarten j. J Virol. 2012 May;86(9):5230-43. doi: 10.1128/JVI.06728-11. Epub 2012 Feb 29. J Virol. 2012. PMID: 22379086 Free PMC article.
56 results