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Verification of cardiac tissue electrophysiology simulators using an N-version benchmark.
Niederer SA, Kerfoot E, Benson AP, Bernabeu MO, Bernus O, Bradley C, Cherry EM, Clayton R, Fenton FH, Garny A, Heidenreich E, Land S, Maleckar M, Pathmanathan P, Plank G, Rodríguez JF, Roy I, Sachse FB, Seemann G, Skavhaug O, Smith NP. Niederer SA, et al. Among authors: garny a. Philos Trans A Math Phys Eng Sci. 2011 Nov 13;369(1954):4331-51. doi: 10.1098/rsta.2011.0139. Philos Trans A Math Phys Eng Sci. 2011. PMID: 21969679 Free PMC article.
Chaste: using agile programming techniques to develop computational biology software.
Pitt-Francis J, Bernabeu MO, Cooper J, Garny A, Momtahan L, Osborne J, Pathmanathan P, Rodriguez B, Whiteley JP, Gavaghan DJ. Pitt-Francis J, et al. Among authors: garny a. Philos Trans A Math Phys Eng Sci. 2008 Sep 13;366(1878):3111-36. doi: 10.1098/rsta.2008.0096. Philos Trans A Math Phys Eng Sci. 2008. PMID: 18565813
Generation of histo-anatomically representative models of the individual heart: tools and application.
Plank G, Burton RA, Hales P, Bishop M, Mansoori T, Bernabeu MO, Garny A, Prassl AJ, Bollensdorff C, Mason F, Mahmood F, Rodriguez B, Grau V, Schneider JE, Gavaghan D, Kohl P. Plank G, et al. Among authors: garny a. Philos Trans A Math Phys Eng Sci. 2009 Jun 13;367(1896):2257-92. doi: 10.1098/rsta.2009.0056. Philos Trans A Math Phys Eng Sci. 2009. PMID: 19414455 Free PMC article.
Mathematical models in physiology.
Gavaghan D, Garny A, Maini PK, Kohl P. Gavaghan D, et al. Among authors: garny a. Philos Trans A Math Phys Eng Sci. 2006 May 15;364(1842):1099-106. doi: 10.1098/rsta.2006.1757. Philos Trans A Math Phys Eng Sci. 2006. PMID: 16608698 Free article. Review.
CellML and associated tools and techniques.
Garny A, Nickerson DP, Cooper J, Weber dos Santos R, Miller AK, McKeever S, Nielsen PM, Hunter PJ. Garny A, et al. Philos Trans A Math Phys Eng Sci. 2008 Sep 13;366(1878):3017-43. doi: 10.1098/rsta.2008.0094. Philos Trans A Math Phys Eng Sci. 2008. PMID: 18579471 Review.
Minimum Information about a Cardiac Electrophysiology Experiment (MICEE): standardised reporting for model reproducibility, interoperability, and data sharing.
Quinn TA, Granite S, Allessie MA, Antzelevitch C, Bollensdorff C, Bub G, Burton RA, Cerbai E, Chen PS, Delmar M, Difrancesco D, Earm YE, Efimov IR, Egger M, Entcheva E, Fink M, Fischmeister R, Franz MR, Garny A, Giles WR, Hannes T, Harding SE, Hunter PJ, Iribe G, Jalife J, Johnson CR, Kass RS, Kodama I, Koren G, Lord P, Markhasin VS, Matsuoka S, McCulloch AD, Mirams GR, Morley GE, Nattel S, Noble D, Olesen SP, Panfilov AV, Trayanova NA, Ravens U, Richard S, Rosenbaum DS, Rudy Y, Sachs F, Sachse FB, Saint DA, Schotten U, Solovyova O, Taggart P, Tung L, Varró A, Volders PG, Wang K, Weiss JN, Wettwer E, White E, Wilders R, Winslow RL, Kohl P. Quinn TA, et al. Among authors: garny a. Prog Biophys Mol Biol. 2011 Oct;107(1):4-10. doi: 10.1016/j.pbiomolbio.2011.07.001. Epub 2011 Jul 6. Prog Biophys Mol Biol. 2011. PMID: 21745496 Free PMC article.
35 results