Holdbrook DA - Search Results

1

Electroporation of the E. coli and S. Aureus membranes: molecular dynamics simulations of complex bacterial membranes.

Piggot TJ, Holdbrook DA, Khalid S. Piggot TJ, et al. Among authors: holdbrook da. J Phys Chem B. 2011 Nov 17;115(45):13381-8. doi: 10.1021/jp207013v. Epub 2011 Oct 21. J Phys Chem B. 2011. PMID: 21970408

2

Stability and membrane orientation of the fukutin transmembrane domain: a combined multiscale molecular dynamics and circular dichroism study.

Holdbrook DA, Leung YM, Piggot TJ, Marius P, Williamson PT, Khalid S. Holdbrook DA, et al. Biochemistry. 2010 Dec 28;49(51):10796-802. doi: 10.1021/bi101743w. Epub 2010 Dec 6. Biochemistry. 2010. PMID: 21105749 Free PMC article.

3

Conformational dynamics and membrane interactions of the E. coli outer membrane protein FecA: a molecular dynamics simulation study.

Piggot TJ, Holdbrook DA, Khalid S. Piggot TJ, et al. Among authors: holdbrook da. Biochim Biophys Acta. 2013 Feb;1828(2):284-93. doi: 10.1016/j.bbamem.2012.08.021. Epub 2012 Aug 30. Biochim Biophys Acta. 2013. PMID: 22960041 Free article.

4

Stability and membrane interactions of an autotransport protein: MD simulations of the Hia translocator domain in a complex membrane environment.

Holdbrook DA, Piggot TJ, Sansom MS, Khalid S. Holdbrook DA, et al. Biochim Biophys Acta. 2013 Feb;1828(2):715-23. doi: 10.1016/j.bbamem.2012.09.002. Epub 2012 Sep 13. Biochim Biophys Acta. 2013. PMID: 22982599 Free article.

5

The NorM MATE transporter from N. gonorrhoeae: insights into drug and ion binding from atomistic molecular dynamics simulations.

Leung YM, Holdbrook DA, Piggot TJ, Khalid S. Leung YM, et al. Among authors: holdbrook da. Biophys J. 2014 Jul 15;107(2):460-468. doi: 10.1016/j.bpj.2014.06.005. Biophys J. 2014. PMID: 25028887 Free PMC article.

6

Dynamics of Crowded Vesicles: Local and Global Responses to Membrane Composition.

Holdbrook DA, Huber RG, Piggot TJ, Bond PJ, Khalid S. Holdbrook DA, et al. PLoS One. 2016 Jun 16;11(6):e0156963. doi: 10.1371/journal.pone.0156963. eCollection 2016. PLoS One. 2016. PMID: 27310814 Free PMC article.

7

The membranes of Gram-negative bacteria: progress in molecular modelling and simulation.

Khalid S, Berglund NA, Holdbrook DA, Leung YM, Parkin J. Khalid S, et al. Among authors: holdbrook da. Biochem Soc Trans. 2015 Apr;43(2):162-7. doi: 10.1042/BST20140262. Biochem Soc Trans. 2015. PMID: 25849911 Review.

8

A Thermodynamic Funnel Drives Bacterial Lipopolysaccharide Transfer in the TLR4 Pathway.

Huber RG, Berglund NA, Kargas V, Marzinek JK, Holdbrook DA, Khalid S, Piggot TJ, Schmidtchen A, Bond PJ. Huber RG, et al. Among authors: holdbrook da. Structure. 2018 Aug 7;26(8):1151-1161.e4. doi: 10.1016/j.str.2018.04.007. Epub 2018 May 17. Structure. 2018. PMID: 29779787 Free article.

9

The simulation approach to lipid-protein interactions.

Paramo T, Garzón D, Holdbrook DA, Khalid S, Bond PJ. Paramo T, et al. Among authors: holdbrook da. Methods Mol Biol. 2013;974:435-55. doi: 10.1007/978-1-62703-275-9_19. Methods Mol Biol. 2013. PMID: 23404287

10

Multiscale Modeling and Simulation Approaches to Lipid-Protein Interactions.

Huber RG, Carpenter TS, Dube N, Holdbrook DA, Ingólfsson HI, Irvine WA, Marzinek JK, Samsudin F, Allison JR, Khalid S, Bond PJ. Huber RG, et al. Among authors: holdbrook da. Methods Mol Biol. 2019;2003:1-30. doi: 10.1007/978-1-4939-9512-7_1. Methods Mol Biol. 2019. PMID: 31218611

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