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Decontamination of MDA reagents for single cell whole genome amplification.
Woyke T, Sczyrba A, Lee J, Rinke C, Tighe D, Clingenpeel S, Malmstrom R, Stepanauskas R, Cheng JF. Woyke T, et al. Among authors: lee j. PLoS One. 2011;6(10):e26161. doi: 10.1371/journal.pone.0026161. Epub 2011 Oct 20. PLoS One. 2011. PMID: 22028825 Free PMC article.
Primer and platform effects on 16S rRNA tag sequencing.
Tremblay J, Singh K, Fern A, Kirton ES, He S, Woyke T, Lee J, Chen F, Dangl JL, Tringe SG. Tremblay J, et al. Among authors: lee j. Front Microbiol. 2015 Aug 4;6:771. doi: 10.3389/fmicb.2015.00771. eCollection 2015. Front Microbiol. 2015. PMID: 26300854 Free PMC article.
Next generation sequencing data of a defined microbial mock community.
Singer E, Andreopoulos B, Bowers RM, Lee J, Deshpande S, Chiniquy J, Ciobanu D, Klenk HP, Zane M, Daum C, Clum A, Cheng JF, Copeland A, Woyke T. Singer E, et al. Among authors: lee j. Sci Data. 2016 Sep 27;3:160081. doi: 10.1038/sdata.2016.81. Sci Data. 2016. PMID: 27673566 Free PMC article.
Sequencing of Genomes from Environmental Single Cells.
Bowers RM, Lee J, Woyke T. Bowers RM, et al. Among authors: lee j. Methods Mol Biol. 2018;1712:97-111. doi: 10.1007/978-1-4939-7514-3_8. Methods Mol Biol. 2018. PMID: 29224071 Free article.
Shotgun metagenome data of a defined mock community using Oxford Nanopore, PacBio and Illumina technologies.
Sevim V, Lee J, Egan R, Clum A, Hundley H, Lee J, Everroad RC, Detweiler AM, Bebout BM, Pett-Ridge J, Göker M, Murray AE, Lindemann SR, Klenk HP, O'Malley R, Zane M, Cheng JF, Copeland A, Daum C, Singer E, Woyke T. Sevim V, et al. Among authors: lee j. Sci Data. 2019 Nov 26;6(1):285. doi: 10.1038/s41597-019-0287-z. Sci Data. 2019. PMID: 31772173 Free PMC article.
A pipeline for targeted metagenomics of environmental bacteria.
Grieb A, Bowers RM, Oggerin M, Goudeau D, Lee J, Malmstrom RR, Woyke T, Fuchs BM. Grieb A, et al. Among authors: lee j. Microbiome. 2020 Feb 15;8(1):21. doi: 10.1186/s40168-020-0790-7. Microbiome. 2020. PMID: 32061258 Free PMC article.
Dissecting the dominant hot spring microbial populations based on community-wide sampling at single-cell genomic resolution.
Bowers RM, Nayfach S, Schulz F, Jungbluth SP, Ruhl IA, Sheremet A, Lee J, Goudeau D, Eloe-Fadrosh EA, Stepanauskas R, Malmstrom RR, Kyrpides NC, Dunfield PF, Woyke T. Bowers RM, et al. Among authors: lee j. ISME J. 2022 May;16(5):1337-1347. doi: 10.1038/s41396-021-01178-4. Epub 2021 Dec 30. ISME J. 2022. PMID: 34969995 Free PMC article.
Expansion of the global RNA virome reveals diverse clades of bacteriophages.
Neri U, Wolf YI, Roux S, Camargo AP, Lee B, Kazlauskas D, Chen IM, Ivanova N, Zeigler Allen L, Paez-Espino D, Bryant DA, Bhaya D; RNA Virus Discovery Consortium; Krupovic M, Dolja VV, Kyrpides NC, Koonin EV, Gophna U. Neri U, et al. Cell. 2022 Oct 13;185(21):4023-4037.e18. doi: 10.1016/j.cell.2022.08.023. Epub 2022 Sep 28. Cell. 2022. PMID: 36174579 Free article.
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