Piana S - Search Results

1

Lindorff-Larsen K, Piana S, Dror RO, Shaw DE. Lindorff-Larsen K, et al. Among authors: piana s. Science. 2011 Oct 28;334(6055):517-20. doi: 10.1126/science.1208351. Science. 2011. PMID: 22034434

2

Atomistic description of the folding of a dimeric protein.

Piana S, Lindorff-Larsen K, Shaw DE. Piana S, et al. J Phys Chem B. 2013 Oct 24;117(42):12935-42. doi: 10.1021/jp4020993. Epub 2013 Aug 15. J Phys Chem B. 2013. PMID: 23882999 Free article.

3

Assessing the accuracy of physical models used in protein-folding simulations: quantitative evidence from long molecular dynamics simulations.

Piana S, Klepeis JL, Shaw DE. Piana S, et al. Curr Opin Struct Biol. 2014 Feb;24:98-105. doi: 10.1016/j.sbi.2013.12.006. Epub 2014 Jan 24. Curr Opin Struct Biol. 2014. PMID: 24463371 Free article. Review.

4

Interaction Networks in Protein Folding via Atomic-Resolution Experiments and Long-Time-Scale Molecular Dynamics Simulations.

Sborgi L, Verma A, Piana S, Lindorff-Larsen K, Cerminara M, Santiveri CM, Shaw DE, de Alba E, Muñoz V. Sborgi L, et al. Among authors: piana s. J Am Chem Soc. 2015 May 27;137(20):6506-16. doi: 10.1021/jacs.5b02324. Epub 2015 May 12. J Am Chem Soc. 2015. PMID: 25924808 Free PMC article.

5

Identifying localized changes in large systems: Change-point detection for biomolecular simulations.

Fan Z, Dror RO, Mildorf TJ, Piana S, Shaw DE. Fan Z, et al. Among authors: piana s. Proc Natl Acad Sci U S A. 2015 Jun 16;112(24):7454-9. doi: 10.1073/pnas.1415846112. Epub 2015 May 29. Proc Natl Acad Sci U S A. 2015. PMID: 26025225 Free PMC article.

6

Assessment of the utility of contact-based restraints in accelerating the prediction of protein structure using molecular dynamics simulations.

Raval A, Piana S, Eastwood MP, Shaw DE. Raval A, et al. Among authors: piana s. Protein Sci. 2016 Jan;25(1):19-29. doi: 10.1002/pro.2770. Epub 2015 Aug 30. Protein Sci. 2016. PMID: 26266489 Free PMC article.

7

Atomic-Level Description of Protein Folding inside the GroEL Cavity.

Piana S, Shaw DE. Piana S, et al. J Phys Chem B. 2018 Dec 13;122(49):11440-11449. doi: 10.1021/acs.jpcb.8b07366. Epub 2018 Oct 19. J Phys Chem B. 2018. PMID: 30277396

8

Mechanism of Coupled Folding-upon-Binding of an Intrinsically Disordered Protein.

Robustelli P, Piana S, Shaw DE. Robustelli P, et al. Among authors: piana s. J Am Chem Soc. 2020 Jun 24;142(25):11092-11101. doi: 10.1021/jacs.0c03217. Epub 2020 Jun 16. J Am Chem Soc. 2020. PMID: 32323533

9

Identification of two distinct inactive conformations of the beta2-adrenergic receptor reconciles structural and biochemical observations.

Dror RO, Arlow DH, Borhani DW, Jensen MØ, Piana S, Shaw DE. Dror RO, et al. Among authors: piana s. Proc Natl Acad Sci U S A. 2009 Mar 24;106(12):4689-94. doi: 10.1073/pnas.0811065106. Epub 2009 Mar 3. Proc Natl Acad Sci U S A. 2009. PMID: 19258456 Free PMC article.

10

Improved side-chain torsion potentials for the Amber ff99SB protein force field.

Lindorff-Larsen K, Piana S, Palmo K, Maragakis P, Klepeis JL, Dror RO, Shaw DE. Lindorff-Larsen K, et al. Among authors: piana s. Proteins. 2010 Jun;78(8):1950-8. doi: 10.1002/prot.22711. Proteins. 2010. PMID: 20408171 Free PMC article.

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