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eggNOG v3.0: orthologous groups covering 1133 organisms at 41 different taxonomic ranges.
Powell S, Szklarczyk D, Trachana K, Roth A, Kuhn M, Muller J, Arnold R, Rattei T, Letunic I, Doerks T, Jensen LJ, von Mering C, Bork P. Powell S, et al. Among authors: arnold r. Nucleic Acids Res. 2012 Jan;40(Database issue):D284-9. doi: 10.1093/nar/gkr1060. Epub 2011 Nov 16. Nucleic Acids Res. 2012. PMID: 22096231 Free PMC article.
SIMAP: the similarity matrix of proteins.
Rattei T, Arnold R, Tischler P, Lindner D, Stümpflen V, Mewes HW. Rattei T, et al. Among authors: arnold r. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D252-6. doi: 10.1093/nar/gkj106. Nucleic Acids Res. 2006. PMID: 16381858 Free PMC article.
SIMAP--structuring the network of protein similarities.
Rattei T, Tischler P, Arnold R, Hamberger F, Krebs J, Krumsiek J, Wachinger B, Stümpflen V, Mewes W. Rattei T, et al. Among authors: arnold r. Nucleic Acids Res. 2008 Jan;36(Database issue):D289-92. doi: 10.1093/nar/gkm963. Epub 2007 Nov 23. Nucleic Acids Res. 2008. PMID: 18037617 Free PMC article.
PEDANT covers all complete RefSeq genomes.
Walter MC, Rattei T, Arnold R, Güldener U, Münsterkötter M, Nenova K, Kastenmüller G, Tischler P, Wölling A, Volz A, Pongratz N, Jost R, Mewes HW, Frishman D. Walter MC, et al. Among authors: arnold r. Nucleic Acids Res. 2009 Jan;37(Database issue):D408-11. doi: 10.1093/nar/gkn749. Epub 2008 Oct 21. Nucleic Acids Res. 2009. PMID: 18940859 Free PMC article.
Effective--a database of predicted secreted bacterial proteins.
Jehl MA, Arnold R, Rattei T. Jehl MA, et al. Among authors: arnold r. Nucleic Acids Res. 2011 Jan;39(Database issue):D591-5. doi: 10.1093/nar/gkq1154. Epub 2010 Nov 11. Nucleic Acids Res. 2011. PMID: 21071416 Free PMC article.
SIMAP--the similarity matrix of proteins.
Arnold R, Rattei T, Tischler P, Truong MD, Stümpflen V, Mewes W. Arnold R, et al. Bioinformatics. 2005 Sep 1;21 Suppl 2:ii42-6. doi: 10.1093/bioinformatics/bti1107. Bioinformatics. 2005. PMID: 16204123
2,820 results