Pachter L - Search Results

1

Identification and correction of systematic error in high-throughput sequence data.

Meacham F, Boffelli D, Dhahbi J, Martin DI, Singer M, Pachter L. Meacham F, et al. Among authors: pachter l. BMC Bioinformatics. 2011 Nov 21;12:451. doi: 10.1186/1471-2105-12-451. BMC Bioinformatics. 2011. PMID: 22099972 Free PMC article.

2

Phylogenetic shadowing of primate sequences to find functional regions of the human genome.

Boffelli D, McAuliffe J, Ovcharenko D, Lewis KD, Ovcharenko I, Pachter L, Rubin EM. Boffelli D, et al. Among authors: pachter l. Science. 2003 Feb 28;299(5611):1391-4. doi: 10.1126/science.1081331. Science. 2003. PMID: 12610304 Free article.

3

Intraspecies sequence comparisons for annotating genomes.

Boffelli D, Weer CV, Weng L, Lewis KD, Shoukry MI, Pachter L, Keys DN, Rubin EM. Boffelli D, et al. Among authors: pachter l. Genome Res. 2004 Dec;14(12):2406-11. doi: 10.1101/gr.3199704. Epub 2004 Nov 15. Genome Res. 2004. PMID: 15545499 Free PMC article.

4

Specific alignment of structured RNA: stochastic grammars and sequence annealing.

Bradley RK, Pachter L, Holmes I. Bradley RK, et al. Among authors: pachter l. Bioinformatics. 2008 Dec 1;24(23):2677-83. doi: 10.1093/bioinformatics/btn495. Epub 2008 Sep 16. Bioinformatics. 2008. PMID: 18796475 Free PMC article.

5

Coverage statistics for sequence census methods.

Evans SN, Hower V, Pachter L. Evans SN, et al. Among authors: pachter l. BMC Bioinformatics. 2010 Aug 18;11:430. doi: 10.1186/1471-2105-11-430. BMC Bioinformatics. 2010. PMID: 20718980 Free PMC article.

6

MetMap enables genome-scale Methyltyping for determining methylation states in populations.

Singer M, Boffelli D, Dhahbi J, Schönhuth A, Schroth GP, Martin DI, Pachter L. Singer M, et al. Among authors: pachter l. PLoS Comput Biol. 2010 Aug 19;6(8):e1000888. doi: 10.1371/journal.pcbi.1000888. PLoS Comput Biol. 2010. PMID: 20856582 Free PMC article.

7

Shape-based peak identification for ChIP-Seq.

Hower V, Evans SN, Pachter L. Hower V, et al. Among authors: pachter l. BMC Bioinformatics. 2011 Jan 12;12:15. doi: 10.1186/1471-2105-12-15. BMC Bioinformatics. 2011. PMID: 21226895 Free PMC article.

8

Multiplexed RNA structure characterization with selective 2'-hydroxyl acylation analyzed by primer extension sequencing (SHAPE-Seq).

Lucks JB, Mortimer SA, Trapnell C, Luo S, Aviran S, Schroth GP, Pachter L, Doudna JA, Arkin AP. Lucks JB, et al. Among authors: pachter l. Proc Natl Acad Sci U S A. 2011 Jul 5;108(27):11063-8. doi: 10.1073/pnas.1106501108. Epub 2011 Jun 3. Proc Natl Acad Sci U S A. 2011. PMID: 21642531 Free PMC article.

9

Phyloepigenomic comparison of great apes reveals a correlation between somatic and germline methylation states.

Martin DI, Singer M, Dhahbi J, Mao G, Zhang L, Schroth GP, Pachter L, Boffelli D. Martin DI, et al. Among authors: pachter l. Genome Res. 2011 Dec;21(12):2049-57. doi: 10.1101/gr.122721.111. Epub 2011 Sep 9. Genome Res. 2011. PMID: 21908772 Free PMC article.

10

Quantifying uniformity of mapped reads.

Hower V, Starfield R, Roberts A, Pachter L. Hower V, et al. Among authors: pachter l. Bioinformatics. 2012 Oct 15;28(20):2680-2. doi: 10.1093/bioinformatics/bts451. Epub 2012 Jul 18. Bioinformatics. 2012. PMID: 22815359 Free PMC article.

Save citations to file

Email citations

Send citations to clipboard

Add to Collections

Add to My Bibliography

Create a file for external citation management software

Your saved search

Your RSS Feed

My Custom Filters

Publication date

Text availability

Article attribute

Article type

Article Language

Species

Sex

Age

Other

256 results

Search Page

Filters