Mina M - Search Results

1

Semantic similarity analysis of protein data: assessment with biological features and issues.

Guzzi PH, Mina M, Guerra C, Cannataro M. Guzzi PH, et al. Among authors: mina m. Brief Bioinform. 2012 Sep;13(5):569-85. doi: 10.1093/bib/bbr066. Epub 2011 Dec 2. Brief Bioinform. 2012. PMID: 22138322

2

AlignNemo: a local network alignment method to integrate homology and topology.

Ciriello G, Mina M, Guzzi PH, Cannataro M, Guerra C. Ciriello G, et al. Among authors: mina m. PLoS One. 2012;7(6):e38107. doi: 10.1371/journal.pone.0038107. Epub 2012 Jun 12. PLoS One. 2012. PMID: 22719866 Free PMC article.

3

Improving the Robustness of Local Network Alignment: Design and Extensive Assessment of a Markov Clustering-Based Approach.

Mina M, Guzzi PH. Mina M, et al. IEEE/ACM Trans Comput Biol Bioinform. 2014 May-Jun;11(3):561-72. doi: 10.1109/TCBB.2014.2318707. IEEE/ACM Trans Comput Biol Bioinform. 2014. PMID: 26356023

4

M-Finder: Uncovering functionally associated proteins from interactome data integrated with GO annotations.

Cho YR, Mina M, Lu Y, Kwon N, Guzzi PH. Cho YR, et al. Among authors: mina m. Proteome Sci. 2013 Nov 7;11(Suppl 1):S3. doi: 10.1186/1477-5956-11-S1-S3. Epub 2013 Nov 7. Proteome Sci. 2013. PMID: 24565382 Free PMC article.

5

Systematic assessment of gene co-regulation within chromatin domains determines differentially active domains across human cancers.

Zufferey M, Liu Y, Tavernari D, Mina M, Ciriello G. Zufferey M, et al. Among authors: mina m. Genome Biol. 2021 Aug 3;22(1):218. doi: 10.1186/s13059-021-02436-6. Genome Biol. 2021. PMID: 34344431 Free PMC article.

6

Epistasis and evolutionary dependencies in human cancers.

Mina M, Iyer A, Ciriello G. Mina M, et al. Curr Opin Genet Dev. 2022 Dec;77:101989. doi: 10.1016/j.gde.2022.101989. Epub 2022 Sep 29. Curr Opin Genet Dev. 2022. PMID: 36182742 Free article. Review.

7

Dynamic Emergence of Observed and Hidden Intra-tumor Heterogeneity.

Raynaud F, Mina M, Ciriello G. Raynaud F, et al. Among authors: mina m. iScience. 2019 Nov 22;21:157-167. doi: 10.1016/j.isci.2019.10.018. Epub 2019 Oct 10. iScience. 2019. PMID: 31655256 Free PMC article.

8

Discovering functional evolutionary dependencies in human cancers.

Mina M, Iyer A, Tavernari D, Raynaud F, Ciriello G. Mina M, et al. Nat Genet. 2020 Nov;52(11):1198-1207. doi: 10.1038/s41588-020-0703-5. Epub 2020 Sep 28. Nat Genet. 2020. PMID: 32989323

9

Systematic inference and comparison of multi-scale chromatin sub-compartments connects spatial organization to cell phenotypes.

Liu Y, Nanni L, Sungalee S, Zufferey M, Tavernari D, Mina M, Ceri S, Oricchio E, Ciriello G. Liu Y, et al. Among authors: mina m. Nat Commun. 2021 May 10;12(1):2439. doi: 10.1038/s41467-021-22666-3. Nat Commun. 2021. PMID: 33972523 Free PMC article.

10

Pan-Cancer Landscape of Aberrant DNA Methylation across Human Tumors.

Saghafinia S, Mina M, Riggi N, Hanahan D, Ciriello G. Saghafinia S, et al. Among authors: mina m. Cell Rep. 2018 Oct 23;25(4):1066-1080.e8. doi: 10.1016/j.celrep.2018.09.082. Cell Rep. 2018. PMID: 30355485 Free article.

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