Raha D - Search Results

1

A high-resolution whole-genome map of key chromatin modifications in the adult Drosophila melanogaster.

Yin H, Sweeney S, Raha D, Snyder M, Lin H. Yin H, et al. Among authors: raha d. PLoS Genet. 2011 Dec;7(12):e1002380. doi: 10.1371/journal.pgen.1002380. Epub 2011 Dec 15. PLoS Genet. 2011. PMID: 22194694 Free PMC article.

2

A major epigenetic programming mechanism guided by piRNAs.

Huang XA, Yin H, Sweeney S, Raha D, Snyder M, Lin H. Huang XA, et al. Among authors: raha d. Dev Cell. 2013 Mar 11;24(5):502-16. doi: 10.1016/j.devcel.2013.01.023. Epub 2013 Feb 21. Dev Cell. 2013. PMID: 23434410 Free PMC article.

3

Genome-wide identification of binding sites defines distinct functions for Caenorhabditis elegans PHA-4/FOXA in development and environmental response.

Zhong M, Niu W, Lu ZJ, Sarov M, Murray JI, Janette J, Raha D, Sheaffer KL, Lam HY, Preston E, Slightham C, Hillier LW, Brock T, Agarwal A, Auerbach R, Hyman AA, Gerstein M, Mango SE, Kim SK, Waterston RH, Reinke V, Snyder M. Zhong M, et al. Among authors: raha d. PLoS Genet. 2010 Feb 19;6(2):e1000848. doi: 10.1371/journal.pgen.1000848. PLoS Genet. 2010. PMID: 20174564 Free PMC article.

4

A large gene network in immature erythroid cells is controlled by the myeloid and B cell transcriptional regulator PU.1.

Wontakal SN, Guo X, Will B, Shi M, Raha D, Mahajan MC, Weissman S, Snyder M, Steidl U, Zheng D, Skoultchi AI. Wontakal SN, et al. Among authors: raha d. PLoS Genet. 2011 Jun;7(6):e1001392. doi: 10.1371/journal.pgen.1001392. Epub 2011 Jun 9. PLoS Genet. 2011. PMID: 21695229 Free PMC article.

5

A highly integrated and complex PPARGC1A transcription factor binding network in HepG2 cells.

Charos AE, Reed BD, Raha D, Szekely AM, Weissman SM, Snyder M. Charos AE, et al. Among authors: raha d. Genome Res. 2012 Sep;22(9):1668-79. doi: 10.1101/gr.127761.111. Genome Res. 2012. PMID: 22955979 Free PMC article.

6

The transcriptional landscape of the yeast genome defined by RNA sequencing.

Nagalakshmi U, Wang Z, Waern K, Shou C, Raha D, Gerstein M, Snyder M. Nagalakshmi U, et al. Among authors: raha d. Science. 2008 Jun 6;320(5881):1344-9. doi: 10.1126/science.1158441. Epub 2008 May 1. Science. 2008. PMID: 18451266 Free PMC article.

7

Close association of RNA polymerase II and many transcription factors with Pol III genes.

Raha D, Wang Z, Moqtaderi Z, Wu L, Zhong G, Gerstein M, Struhl K, Snyder M. Raha D, et al. Proc Natl Acad Sci U S A. 2010 Feb 23;107(8):3639-44. doi: 10.1073/pnas.0911315106. Epub 2010 Feb 5. Proc Natl Acad Sci U S A. 2010. PMID: 20139302 Free PMC article.

8

ChIP-Seq: a method for global identification of regulatory elements in the genome.

Raha D, Hong M, Snyder M. Raha D, et al. Curr Protoc Mol Biol. 2010 Jul;Chapter 21:Unit 21.19.1-14. doi: 10.1002/0471142727.mb2119s91. Curr Protoc Mol Biol. 2010. PMID: 20583098

9

Genome-wide chromatin occupancy analysis reveals a role for ASH2 in transcriptional pausing.

Pérez-Lluch S, Blanco E, Carbonell A, Raha D, Snyder M, Serras F, Corominas M. Pérez-Lluch S, et al. Among authors: raha d. Nucleic Acids Res. 2011 Jun;39(11):4628-39. doi: 10.1093/nar/gkq1322. Epub 2011 Feb 9. Nucleic Acids Res. 2011. PMID: 21310711 Free PMC article.

10

AlleleSeq: analysis of allele-specific expression and binding in a network framework.

Rozowsky J, Abyzov A, Wang J, Alves P, Raha D, Harmanci A, Leng J, Bjornson R, Kong Y, Kitabayashi N, Bhardwaj N, Rubin M, Snyder M, Gerstein M. Rozowsky J, et al. Among authors: raha d. Mol Syst Biol. 2011 Aug 2;7:522. doi: 10.1038/msb.2011.54. Mol Syst Biol. 2011. PMID: 21811232 Free PMC article.

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