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Mash: fast genome and metagenome distance estimation using MinHash.
Ondov BD, Treangen TJ, Melsted P, Mallonee AB, Bergman NH, Koren S, Phillippy AM. Ondov BD, et al. Among authors: melsted p. Genome Biol. 2016 Jun 20;17(1):132. doi: 10.1186/s13059-016-0997-x. Genome Biol. 2016. PMID: 27323842 Free PMC article.
Pseudoalignment for metagenomic read assignment.
Schaeffer L, Pimentel H, Bray N, Melsted P, Pachter L. Schaeffer L, et al. Among authors: melsted p. Bioinformatics. 2017 Jul 15;33(14):2082-2088. doi: 10.1093/bioinformatics/btx106. Bioinformatics. 2017. PMID: 28334086 Free PMC article.
64 results