Zhang MQ - Search Results

1

A highly efficient and effective motif discovery method for ChIP-seq/ChIP-chip data using positional information.

Ma X, Kulkarni A, Zhang Z, Xuan Z, Serfling R, Zhang MQ. Ma X, et al. Among authors: zhang mq, zhang z. Nucleic Acids Res. 2012 Apr;40(7):e50. doi: 10.1093/nar/gkr1135. Epub 2012 Jan 6. Nucleic Acids Res. 2012. PMID: 22228832 Free PMC article.

2

Transcription factor binding element detection using functional clustering of mutant expression data.

Chen G, Hata N, Zhang MQ. Chen G, et al. Among authors: zhang mq. Nucleic Acids Res. 2004 Apr 28;32(8):2362-71. doi: 10.1093/nar/gkh557. Print 2004. Nucleic Acids Res. 2004. PMID: 15115798 Free PMC article.

3

TRED: a Transcriptional Regulatory Element Database and a platform for in silico gene regulation studies.

Zhao F, Xuan Z, Liu L, Zhang MQ. Zhao F, et al. Among authors: zhang mq. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D103-7. doi: 10.1093/nar/gki004. Nucleic Acids Res. 2005. PMID: 15608156 Free PMC article.

4

From worm to human: bioinformatics approaches to identify FOXO target genes.

Xuan Z, Zhang MQ. Xuan Z, et al. Among authors: zhang mq. Mech Ageing Dev. 2005 Jan;126(1):209-15. doi: 10.1016/j.mad.2004.09.021. Mech Ageing Dev. 2005. PMID: 15610780

5

Genome-wide promoter extraction and analysis in human, mouse, and rat.

Xuan Z, Zhao F, Wang J, Chen G, Zhang MQ. Xuan Z, et al. Among authors: zhang mq. Genome Biol. 2005;6(8):R72. doi: 10.1186/gb-2005-6-8-r72. Epub 2005 Aug 1. Genome Biol. 2005. PMID: 16086854 Free PMC article.

6

Regulating gene expression through RNA nuclear retention.

Prasanth KV, Prasanth SG, Xuan Z, Hearn S, Freier SM, Bennett CF, Zhang MQ, Spector DL. Prasanth KV, et al. Among authors: zhang mq. Cell. 2005 Oct 21;123(2):249-63. doi: 10.1016/j.cell.2005.08.033. Cell. 2005. PMID: 16239143 Free article.

7

DNA motifs in human and mouse proximal promoters predict tissue-specific expression.

Smith AD, Sumazin P, Xuan Z, Zhang MQ. Smith AD, et al. Among authors: zhang mq. Proc Natl Acad Sci U S A. 2006 Apr 18;103(16):6275-80. doi: 10.1073/pnas.0508169103. Epub 2006 Apr 10. Proc Natl Acad Sci U S A. 2006. PMID: 16606849 Free PMC article.

8

A clustering property of highly-degenerate transcription factor binding sites in the mammalian genome.

Zhang C, Xuan Z, Otto S, Hover JR, McCorkle SR, Mandel G, Zhang MQ. Zhang C, et al. Among authors: zhang mq. Nucleic Acids Res. 2006 May 2;34(8):2238-46. doi: 10.1093/nar/gkl248. Print 2006. Nucleic Acids Res. 2006. PMID: 16670430 Free PMC article.

9

Pan-genome isolation of low abundance transcripts using SAGE tag.

Kim YC, Jung YC, Xuan Z, Dong H, Zhang MQ, Wang SM. Kim YC, et al. Among authors: zhang mq. FEBS Lett. 2006 Dec 11;580(28-29):6721-9. doi: 10.1016/j.febslet.2006.11.013. Epub 2006 Nov 14. FEBS Lett. 2006. PMID: 17113583 Free PMC article.

10

TRED: a transcriptional regulatory element database, new entries and other development.

Jiang C, Xuan Z, Zhao F, Zhang MQ. Jiang C, et al. Among authors: zhang mq. Nucleic Acids Res. 2007 Jan;35(Database issue):D137-40. doi: 10.1093/nar/gkl1041. Nucleic Acids Res. 2007. PMID: 17202159 Free PMC article.

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