Fullwood MJ - Search Results

1

Extensive promoter-centered chromatin interactions provide a topological basis for transcription regulation.

Li G, Ruan X, Auerbach RK, Sandhu KS, Zheng M, Wang P, Poh HM, Goh Y, Lim J, Zhang J, Sim HS, Peh SQ, Mulawadi FH, Ong CT, Orlov YL, Hong S, Zhang Z, Landt S, Raha D, Euskirchen G, Wei CL, Ge W, Wang H, Davis C, Fisher-Aylor KI, Mortazavi A, Gerstein M, Gingeras T, Wold B, Sun Y, Fullwood MJ, Cheung E, Liu E, Sung WK, Snyder M, Ruan Y. Li G, et al. Among authors: fullwood mj. Cell. 2012 Jan 20;148(1-2):84-98. doi: 10.1016/j.cell.2011.12.014. Cell. 2012. PMID: 22265404 Free PMC article.

2

Multiplex sequencing of paired-end ditags (MS-PET): a strategy for the ultra-high-throughput analysis of transcriptomes and genomes.

Ng P, Tan JJ, Ooi HS, Lee YL, Chiu KP, Fullwood MJ, Srinivasan KG, Perbost C, Du L, Sung WK, Wei CL, Ruan Y. Ng P, et al. Among authors: fullwood mj. Nucleic Acids Res. 2006 Jul 13;34(12):e84. doi: 10.1093/nar/gkl444. Nucleic Acids Res. 2006. PMID: 16840528 Free PMC article.

3

The use of multiple displacement amplification to amplify complex DNA libraries.

Fullwood MJ, Tan JJ, Ng PW, Chiu KP, Liu J, Wei CL, Ruan Y. Fullwood MJ, et al. Nucleic Acids Res. 2008 Mar;36(5):e32. doi: 10.1093/nar/gkn074. Epub 2008 Feb 19. Nucleic Acids Res. 2008. PMID: 18285362 Free PMC article.

4

ChIP-based methods for the identification of long-range chromatin interactions.

Fullwood MJ, Ruan Y. Fullwood MJ, et al. J Cell Biochem. 2009 May 1;107(1):30-9. doi: 10.1002/jcb.22116. J Cell Biochem. 2009. PMID: 19247990 Free PMC article. Review.

5

Next-generation DNA sequencing of paired-end tags (PET) for transcriptome and genome analyses.

Fullwood MJ, Wei CL, Liu ET, Ruan Y. Fullwood MJ, et al. Genome Res. 2009 Apr;19(4):521-32. doi: 10.1101/gr.074906.107. Genome Res. 2009. PMID: 19339662 Free PMC article. Review.

6

An oestrogen-receptor-alpha-bound human chromatin interactome.

Fullwood MJ, Liu MH, Pan YF, Liu J, Xu H, Mohamed YB, Orlov YL, Velkov S, Ho A, Mei PH, Chew EG, Huang PY, Welboren WJ, Han Y, Ooi HS, Ariyaratne PN, Vega VB, Luo Y, Tan PY, Choy PY, Wansa KD, Zhao B, Lim KS, Leow SC, Yow JS, Joseph R, Li H, Desai KV, Thomsen JS, Lee YK, Karuturi RK, Herve T, Bourque G, Stunnenberg HG, Ruan X, Cacheux-Rataboul V, Sung WK, Liu ET, Wei CL, Cheung E, Ruan Y. Fullwood MJ, et al. Nature. 2009 Nov 5;462(7269):58-64. doi: 10.1038/nature08497. Nature. 2009. PMID: 19890323 Free PMC article.

7

Chromatin interaction analysis using paired-end tag sequencing.

Fullwood MJ, Han Y, Wei CL, Ruan X, Ruan Y. Fullwood MJ, et al. Curr Protoc Mol Biol. 2010 Jan;Chapter 21:Unit 21.15.1-25. doi: 10.1002/0471142727.mb2115s89. Curr Protoc Mol Biol. 2010. PMID: 20069536 Free PMC article.

8

ChIA-PET tool for comprehensive chromatin interaction analysis with paired-end tag sequencing.

Li G, Fullwood MJ, Xu H, Mulawadi FH, Velkov S, Vega V, Ariyaratne PN, Mohamed YB, Ooi HS, Tennakoon C, Wei CL, Ruan Y, Sung WK. Li G, et al. Among authors: fullwood mj. Genome Biol. 2010;11(2):R22. doi: 10.1186/gb-2010-11-2-r22. Epub 2010 Feb 25. Genome Biol. 2010. PMID: 20181287 Free PMC article.

9

Next-generation sequencing of apoptotic DNA breakpoints reveals association with actively transcribed genes and gene translocations.

Fullwood MJ, Lee J, Lin L, Li G, Huss M, Ng P, Sung WK, Shenolikar S. Fullwood MJ, et al. PLoS One. 2011;6(11):e26054. doi: 10.1371/journal.pone.0026054. Epub 2011 Nov 8. PLoS One. 2011. PMID: 22087219 Free PMC article.

10

Chromatin Interaction Analysis with Paired-End Tag Sequencing (ChIA-PET) for mapping chromatin interactions and understanding transcription regulation.

Goh Y, Fullwood MJ, Poh HM, Peh SQ, Ong CT, Zhang J, Ruan X, Ruan Y. Goh Y, et al. Among authors: fullwood mj. J Vis Exp. 2012 Apr 30;(62):3770. doi: 10.3791/3770. J Vis Exp. 2012. PMID: 22564980 Free PMC article.

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