Tyagi M - Search Results

1

Homology inference of protein-protein interactions via conserved binding sites.

Tyagi M, Thangudu RR, Zhang D, Bryant SH, Madej T, Panchenko AR. Tyagi M, et al. PLoS One. 2012;7(1):e28896. doi: 10.1371/journal.pone.0028896. Epub 2012 Jan 31. PLoS One. 2012. PMID: 22303436 Free PMC article.

2

Exploring functional roles of multibinding protein interfaces.

Tyagi M, Shoemaker BA, Bryant SH, Panchenko AR. Tyagi M, et al. Protein Sci. 2009 Aug;18(8):1674-83. doi: 10.1002/pro.181. Protein Sci. 2009. PMID: 19591200 Free PMC article.

3

Inferred Biomolecular Interaction Server--a web server to analyze and predict protein interacting partners and binding sites.

Shoemaker BA, Zhang D, Thangudu RR, Tyagi M, Fong JH, Marchler-Bauer A, Bryant SH, Madej T, Panchenko AR. Shoemaker BA, et al. Among authors: tyagi m. Nucleic Acids Res. 2010 Jan;38(Database issue):D518-24. doi: 10.1093/nar/gkp842. Epub 2009 Oct 20. Nucleic Acids Res. 2010. PMID: 19843613 Free PMC article.

4

Knowledge-based annotation of small molecule binding sites in proteins.

Thangudu RR, Tyagi M, Shoemaker BA, Bryant SH, Panchenko AR, Madej T. Thangudu RR, et al. Among authors: tyagi m. BMC Bioinformatics. 2010 Jul 1;11:365. doi: 10.1186/1471-2105-11-365. BMC Bioinformatics. 2010. PMID: 20594344 Free PMC article.

5

IBIS (Inferred Biomolecular Interaction Server) reports, predicts and integrates multiple types of conserved interactions for proteins.

Shoemaker BA, Zhang D, Tyagi M, Thangudu RR, Fong JH, Marchler-Bauer A, Bryant SH, Madej T, Panchenko AR. Shoemaker BA, et al. Among authors: tyagi m. Nucleic Acids Res. 2012 Jan;40(Database issue):D834-40. doi: 10.1093/nar/gkr997. Epub 2011 Nov 18. Nucleic Acids Res. 2012. PMID: 22102591 Free PMC article.

6

Large-scale mapping of human protein interactome using structural complexes.

Tyagi M, Hashimoto K, Shoemaker BA, Wuchty S, Panchenko AR. Tyagi M, et al. EMBO Rep. 2012 Mar 1;13(3):266-71. doi: 10.1038/embor.2011.261. EMBO Rep. 2012. PMID: 22261719 Free PMC article.

7

Cancer missense mutations alter binding properties of proteins and their interaction networks.

Nishi H, Tyagi M, Teng S, Shoemaker BA, Hashimoto K, Alexov E, Wuchty S, Panchenko AR. Nishi H, et al. Among authors: tyagi m. PLoS One. 2013 Jun 14;8(6):e66273. doi: 10.1371/journal.pone.0066273. Print 2013. PLoS One. 2013. PMID: 23799087 Free PMC article.

8

Knowledge-based prediction of protein backbone conformation using a structural alphabet.

Vetrivel I, Mahajan S, Tyagi M, Hoffmann L, Sanejouand YH, Srinivasan N, de Brevern AG, Cadet F, Offmann B. Vetrivel I, et al. Among authors: tyagi m. PLoS One. 2017 Nov 21;12(11):e0186215. doi: 10.1371/journal.pone.0186215. eCollection 2017. PLoS One. 2017. PMID: 29161266 Free PMC article.

9

A substitution matrix for structural alphabet based on structural alignment of homologous proteins and its applications.

Tyagi M, Gowri VS, Srinivasan N, de Brevern AG, Offmann B. Tyagi M, et al. Proteins. 2006 Oct 1;65(1):32-9. doi: 10.1002/prot.21087. Proteins. 2006. PMID: 16894618 Free article.

10

Protein Block Expert (PBE): a web-based protein structure analysis server using a structural alphabet.

Tyagi M, Sharma P, Swamy CS, Cadet F, Srinivasan N, de Brevern AG, Offmann B. Tyagi M, et al. Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W119-23. doi: 10.1093/nar/gkl199. Nucleic Acids Res. 2006. PMID: 16844973 Free PMC article.

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