Silva JC - Search Results

1

PTMScan direct: identification and quantification of peptides from critical signaling proteins by immunoaffinity enrichment coupled with LC-MS/MS.

Stokes MP, Farnsworth CL, Moritz A, Silva JC, Jia X, Lee KA, Guo A, Polakiewicz RD, Comb MJ. Stokes MP, et al. Among authors: silva jc. Mol Cell Proteomics. 2012 May;11(5):187-201. doi: 10.1074/mcp.M111.015883. Epub 2012 Feb 9. Mol Cell Proteomics. 2012. PMID: 22322096 Free PMC article.

2

Absolute quantification of proteins by LCMSE: a virtue of parallel MS acquisition.

Silva JC, Gorenstein MV, Li GZ, Vissers JP, Geromanos SJ. Silva JC, et al. Mol Cell Proteomics. 2006 Jan;5(1):144-56. doi: 10.1074/mcp.M500230-MCP200. Epub 2005 Oct 11. Mol Cell Proteomics. 2006. PMID: 16219938 Free article.

3

Simultaneous qualitative and quantitative analysis of the Escherichia coli proteome: a sweet tale.

Silva JC, Denny R, Dorschel C, Gorenstein MV, Li GZ, Richardson K, Wall D, Geromanos SJ. Silva JC, et al. Mol Cell Proteomics. 2006 Apr;5(4):589-607. doi: 10.1074/mcp.M500321-MCP200. Epub 2006 Jan 5. Mol Cell Proteomics. 2006. PMID: 16399765 Free article.

4

Calorie restriction alters mitochondrial protein acetylation.

Schwer B, Eckersdorff M, Li Y, Silva JC, Fermin D, Kurtev MV, Giallourakis C, Comb MJ, Alt FW, Lombard DB. Schwer B, et al. Among authors: silva jc. Aging Cell. 2009 Sep;8(5):604-6. doi: 10.1111/j.1474-9726.2009.00503.x. Epub 2009 Jul 9. Aging Cell. 2009. PMID: 19594485 Free PMC article.

5

Phosphoproteomic characterization of PYK2 signaling pathways involved in osteogenesis.

Bonnette PC, Robinson BS, Silva JC, Stokes MP, Brosius AD, Baumann A, Buckbinder L. Bonnette PC, et al. Among authors: silva jc. J Proteomics. 2010 May 7;73(7):1306-20. doi: 10.1016/j.jprot.2010.01.011. Epub 2010 Jan 28. J Proteomics. 2010. PMID: 20116462

6

Ubiquitin ligase substrate identification through quantitative proteomics at both the protein and peptide levels.

Lee KA, Hammerle LP, Andrews PS, Stokes MP, Mustelin T, Silva JC, Black RA, Doedens JR. Lee KA, et al. Among authors: silva jc. J Biol Chem. 2011 Dec 2;286(48):41530-41538. doi: 10.1074/jbc.M111.248856. Epub 2011 Oct 10. J Biol Chem. 2011. PMID: 21987572 Free PMC article.

7

Quantitative profiling of DNA damage and apoptotic pathways in UV damaged cells using PTMScan Direct.

Stokes MP, Silva JC, Jia X, Lee KA, Polakiewicz RD, Comb MJ. Stokes MP, et al. Among authors: silva jc. Int J Mol Sci. 2012 Dec 21;14(1):286-307. doi: 10.3390/ijms14010286. Int J Mol Sci. 2012. PMID: 23344034 Free PMC article.

8

Systems-wide analysis of K-Ras, Cdc42, and PAK4 signaling by quantitative phosphoproteomics.

Gnad F, Young A, Zhou W, Lyle K, Ong CC, Stokes MP, Silva JC, Belvin M, Friedman LS, Koeppen H, Minden A, Hoeflich KP. Gnad F, et al. Among authors: silva jc. Mol Cell Proteomics. 2013 Aug;12(8):2070-80. doi: 10.1074/mcp.M112.027052. Epub 2013 Apr 22. Mol Cell Proteomics. 2013. PMID: 23608596 Free PMC article.

9

Interrogating cAMP-dependent kinase signaling in Jurkat T cells via a protein kinase A targeted immune-precipitation phosphoproteomics approach.

Giansanti P, Stokes MP, Silva JC, Scholten A, Heck AJ. Giansanti P, et al. Among authors: silva jc. Mol Cell Proteomics. 2013 Nov;12(11):3350-9. doi: 10.1074/mcp.O113.028456. Epub 2013 Jul 23. Mol Cell Proteomics. 2013. PMID: 23882029 Free PMC article.

10

Mass spectrometry-based detection of protein acetylation.

Li Y, Silva JC, Skinner ME, Lombard DB. Li Y, et al. Among authors: silva jc. Methods Mol Biol. 2013;1077:81-104. doi: 10.1007/978-1-62703-637-5_6. Methods Mol Biol. 2013. PMID: 24014401 Free PMC article.

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