Facciotti MT - Search Results

1

A workflow for genome-wide mapping of archaeal transcription factors with ChIP-seq.

Wilbanks EG, Larsen DJ, Neches RY, Yao AI, Wu CY, Kjolby RA, Facciotti MT. Wilbanks EG, et al. Among authors: facciotti mt. Nucleic Acids Res. 2012 May;40(10):e74. doi: 10.1093/nar/gks063. Epub 2012 Feb 9. Nucleic Acids Res. 2012. PMID: 22323522 Free PMC article.

2

A Monte Carlo-based framework enhances the discovery and interpretation of regulatory sequence motifs.

Seitzer P, Wilbanks EG, Larsen DJ, Facciotti MT. Seitzer P, et al. Among authors: facciotti mt. BMC Bioinformatics. 2012 Nov 27;13:317. doi: 10.1186/1471-2105-13-317. BMC Bioinformatics. 2012. PMID: 23181585 Free PMC article.

3

Evaluation of algorithm performance in ChIP-seq peak detection.

Wilbanks EG, Facciotti MT. Wilbanks EG, et al. Among authors: facciotti mt. PLoS One. 2010 Jul 8;5(7):e11471. doi: 10.1371/journal.pone.0011471. PLoS One. 2010. PMID: 20628599 Free PMC article.

4

Regulatory multidimensionality of gas vesicle biogenesis in Halobacterium salinarum NRC-1.

Yao AI, Facciotti MT. Yao AI, et al. Among authors: facciotti mt. Archaea. 2011;2011:716456. doi: 10.1155/2011/716456. Epub 2011 Oct 24. Archaea. 2011. PMID: 22110395 Free PMC article.

5

Promoter element arising from the fusion of standard BioBrick parts.

Yao AI, Fenton TA, Owsley K, Seitzer P, Larsen DJ, Sit H, Lau J, Nair A, Tantiongloc J, Tagkopoulos I, Facciotti MT. Yao AI, et al. Among authors: facciotti mt. ACS Synth Biol. 2013 Feb 15;2(2):111-20. doi: 10.1021/sb300114d. Epub 2013 Jan 11. ACS Synth Biol. 2013. PMID: 23656374

6

Role of squalene in the organization of monolayers derived from lipid extracts of Halobacterium salinarum.

Gilmore SF, Yao AI, Tietel Z, Kind T, Facciotti MT, Parikh AN. Gilmore SF, et al. Among authors: facciotti mt. Langmuir. 2013 Jun 25;29(25):7922-30. doi: 10.1021/la401412t. Epub 2013 Jun 10. Langmuir. 2013. PMID: 23713788 Free PMC article.

7

Identification of an archaeal mercury regulon by chromatin immunoprecipitation.

Rudrappa D, Yao AI, White D, Pavlik BJ, Singh R, Facciotti MT, Blum P. Rudrappa D, et al. Among authors: facciotti mt. Microbiology (Reading). 2015 Dec;161(12):2423-33. doi: 10.1099/mic.0.000189. Epub 2015 Sep 25. Microbiology (Reading). 2015. PMID: 26408318 Free article.

8

Sequencing of seven haloarchaeal genomes reveals patterns of genomic flux.

Lynch EA, Langille MG, Darling A, Wilbanks EG, Haltiner C, Shao KS, Starr MO, Teiling C, Harkins TT, Edwards RA, Eisen JA, Facciotti MT. Lynch EA, et al. Among authors: facciotti mt. PLoS One. 2012;7(7):e41389. doi: 10.1371/journal.pone.0041389. Epub 2012 Jul 24. PLoS One. 2012. PMID: 22848480 Free PMC article.

9

Phylogenetically driven sequencing of extremely halophilic archaea reveals strategies for static and dynamic osmo-response.

Becker EA, Seitzer PM, Tritt A, Larsen D, Krusor M, Yao AI, Wu D, Madern D, Eisen JA, Darling AE, Facciotti MT. Becker EA, et al. Among authors: facciotti mt. PLoS Genet. 2014 Nov 13;10(11):e1004784. doi: 10.1371/journal.pgen.1004784. eCollection 2014 Nov. PLoS Genet. 2014. PMID: 25393412 Free PMC article.

10

The Exploration of Novel Regulatory Relationships Drives Haloarchaeal Operon-Like Structural Dynamics over Short Evolutionary Distances.

Seitzer P, Yao AI, Cisneros A, Facciotti MT. Seitzer P, et al. Among authors: facciotti mt. Microorganisms. 2020 Nov 30;8(12):1900. doi: 10.3390/microorganisms8121900. Microorganisms. 2020. PMID: 33266086 Free PMC article.

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