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109 results

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Page 1
A DNA hypermethylation module for the stem/progenitor cell signature of cancer.
Easwaran H, Johnstone SE, Van Neste L, Ohm J, Mosbruger T, Wang Q, Aryee MJ, Joyce P, Ahuja N, Weisenberger D, Collisson E, Zhu J, Yegnasubramanian S, Matsui W, Baylin SB. Easwaran H, et al. Among authors: aryee mj. Genome Res. 2012 May;22(5):837-49. doi: 10.1101/gr.131169.111. Epub 2012 Mar 5. Genome Res. 2012. PMID: 22391556 Free PMC article.
Dysregulated Repeat Element Viral-like Immune Response in Hepatocellular Carcinoma.
Coley AK, Lu C, Pankaj A, Emmett MJ, Lang ER, Song Y, Xu KH, Xu N, Patel BK, Chougule A, Nieman LT, Aryee MJ, Ferrone CR, Deshpande V, Franses JW, Ting DT. Coley AK, et al. Among authors: aryee mj. bioRxiv [Preprint]. 2023 Dec 5:2023.12.04.570014. doi: 10.1101/2023.12.04.570014. bioRxiv. 2023. PMID: 38105940 Free PMC article. Preprint.
Author Correction: Massively parallel single-cell mitochondrial DNA genotyping and chromatin profiling.
Lareau CA, Ludwig LS, Muus C, Gohil SH, Zhao T, Chiang Z, Pelka K, Verboon JM, Luo W, Christian E, Rosebrock D, Getz G, Boland GM, Chen F, Buenrostro JD, Hacohen N, Wu CJ, Aryee MJ, Regev A, Sankaran VG. Lareau CA, et al. Among authors: aryee mj. Nat Biotechnol. 2023 Sep;41(9):1345. doi: 10.1038/s41587-023-01942-1. Nat Biotechnol. 2023. PMID: 37653227 No abstract available.
Differential methylation of tissue- and cancer-specific CpG island shores distinguishes human induced pluripotent stem cells, embryonic stem cells and fibroblasts.
Doi A, Park IH, Wen B, Murakami P, Aryee MJ, Irizarry R, Herb B, Ladd-Acosta C, Rho J, Loewer S, Miller J, Schlaeger T, Daley GQ, Feinberg AP. Doi A, et al. Among authors: aryee mj. Nat Genet. 2009 Dec;41(12):1350-3. doi: 10.1038/ng.471. Epub 2009 Nov 1. Nat Genet. 2009. PMID: 19881528 Free PMC article.
Chromosome-wide mapping of DNA methylation patterns in normal and malignant prostate cells reveals pervasive methylation of gene-associated and conserved intergenic sequences.
Yegnasubramanian S, Wu Z, Haffner MC, Esopi D, Aryee MJ, Badrinath R, He TL, Morgan JD, Carvalho B, Zheng Q, De Marzo AM, Irizarry RA, Nelson WG. Yegnasubramanian S, et al. Among authors: aryee mj. BMC Genomics. 2011 Jun 13;12:313. doi: 10.1186/1471-2164-12-313. BMC Genomics. 2011. PMID: 21669002 Free PMC article.
High-specificity bioinformatics framework for epigenomic profiling of discordant twins reveals specific and shared markers for ACPA and ACPA-positive rheumatoid arthritis.
Gomez-Cabrero D, Almgren M, Sjöholm LK, Hensvold AH, Ringh MV, Tryggvadottir R, Kere J, Scheynius A, Acevedo N, Reinius L, Taub MA, Montano C, Aryee MJ, Feinberg JI, Feinberg AP, Tegnér J, Klareskog L, Catrina AI, Ekström TJ. Gomez-Cabrero D, et al. Among authors: aryee mj. Genome Med. 2016 Nov 22;8(1):124. doi: 10.1186/s13073-016-0374-0. Genome Med. 2016. PMID: 27876072 Free PMC article.
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