Patil KR - Search Results

1

Prediction and identification of sequences coding for orphan enzymes using genomic and metagenomic neighbours.

Yamada T, Waller AS, Raes J, Zelezniak A, Perchat N, Perret A, Salanoubat M, Patil KR, Weissenbach J, Bork P. Yamada T, et al. Among authors: patil kr. Mol Syst Biol. 2012 May 8;8:581. doi: 10.1038/msb.2012.13. Mol Syst Biol. 2012. PMID: 22569339 Free PMC article.

2

Metabolic network topology reveals transcriptional regulatory signatures of type 2 diabetes.

Zelezniak A, Pers TH, Soares S, Patti ME, Patil KR. Zelezniak A, et al. Among authors: patil kr. PLoS Comput Biol. 2010 Apr 1;6(4):e1000729. doi: 10.1371/journal.pcbi.1000729. PLoS Comput Biol. 2010. PMID: 20369014 Free PMC article.

3

Flux coupling and transcriptional regulation within the metabolic network of the photosynthetic bacterium Synechocystis sp. PCC6803.

Montagud A, Zelezniak A, Navarro E, de Córdoba PF, Urchueguía JF, Patil KR. Montagud A, et al. Among authors: patil kr. Biotechnol J. 2011 Mar;6(3):330-42. doi: 10.1002/biot.201000109. Epub 2011 Jan 11. Biotechnol J. 2011. PMID: 21226012

4

Impact of stoichiometry representation on simulation of genotype-phenotype relationships in metabolic networks.

Brochado AR, Andrejev S, Maranas CD, Patil KR. Brochado AR, et al. Among authors: patil kr. PLoS Comput Biol. 2012;8(11):e1002758. doi: 10.1371/journal.pcbi.1002758. Epub 2012 Nov 1. PLoS Comput Biol. 2012. PMID: 23133362 Free PMC article.

5

Model-guided identification of gene deletion targets for metabolic engineering in Saccharomyces cerevisiae.

Brochado AR, Patil KR. Brochado AR, et al. Among authors: patil kr. Methods Mol Biol. 2014;1152:281-94. doi: 10.1007/978-1-4939-0563-8_17. Methods Mol Biol. 2014. PMID: 24744040

6

Contribution of network connectivity in determining the relationship between gene expression and metabolite concentration changes.

Zelezniak A, Sheridan S, Patil KR. Zelezniak A, et al. Among authors: patil kr. PLoS Comput Biol. 2014 Apr 24;10(4):e1003572. doi: 10.1371/journal.pcbi.1003572. eCollection 2014 Apr. PLoS Comput Biol. 2014. PMID: 24762675 Free PMC article.

7

Metabolic dependencies drive species co-occurrence in diverse microbial communities.

Zelezniak A, Andrejev S, Ponomarova O, Mende DR, Bork P, Patil KR. Zelezniak A, et al. Among authors: patil kr. Proc Natl Acad Sci U S A. 2015 May 19;112(20):6449-54. doi: 10.1073/pnas.1421834112. Epub 2015 May 4. Proc Natl Acad Sci U S A. 2015. PMID: 25941371 Free PMC article.

8

Do genome-scale models need exact solvers or clearer standards?

Ebrahim A, Almaas E, Bauer E, Bordbar A, Burgard AP, Chang RL, Dräger A, Famili I, Feist AM, Fleming RM, Fong SS, Hatzimanikatis V, Herrgård MJ, Holder A, Hucka M, Hyduke D, Jamshidi N, Lee SY, Le Novère N, Lerman JA, Lewis NE, Ma D, Mahadevan R, Maranas C, Nagarajan H, Navid A, Nielsen J, Nielsen LK, Nogales J, Noronha A, Pal C, Palsson BO, Papin JA, Patil KR, Price ND, Reed JL, Saunders M, Senger RS, Sonnenschein N, Sun Y, Thiele I. Ebrahim A, et al. Among authors: patil kr. Mol Syst Biol. 2015 Oct 14;11(10):831. doi: 10.15252/msb.20156157. Mol Syst Biol. 2015. PMID: 26467284 Free PMC article. No abstract available.

9

The metabolic background is a global player in Saccharomyces gene expression epistasis.

Alam MT, Zelezniak A, Mülleder M, Shliaha P, Schwarz R, Capuano F, Vowinckel J, Radmanesfahar E, Krüger A, Calvani E, Michel S, Börno S, Christen S, Patil KR, Timmermann B, Lilley KS, Ralser M. Alam MT, et al. Among authors: patil kr. Nat Microbiol. 2016 Feb 1;1:15030. doi: 10.1038/nmicrobiol.2015.30. Nat Microbiol. 2016. PMID: 27572163 Free PMC article.

10

Metabolic anchor reactions for robust biorefining.

Jouhten P, Huerta-Cepas J, Bork P, Patil KR. Jouhten P, et al. Among authors: patil kr. Metab Eng. 2017 Mar;40:1-4. doi: 10.1016/j.ymben.2017.02.010. Epub 2017 Feb 21. Metab Eng. 2017. PMID: 28232136 Free PMC article.

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