Hoksza D - Search Results

1

Efficient RNA pairwise structure comparison by SETTER method.

Hoksza D, Svozil D. Hoksza D, et al. Bioinformatics. 2012 Jul 15;28(14):1858-64. doi: 10.1093/bioinformatics/bts301. Epub 2012 May 18. Bioinformatics. 2012. PMID: 22611129

2

SETTER: web server for RNA structure comparison.

Cech P, Svozil D, Hoksza D. Cech P, et al. Among authors: hoksza d. Nucleic Acids Res. 2012 Jul;40(Web Server issue):W42-8. doi: 10.1093/nar/gks560. Epub 2012 Jun 11. Nucleic Acids Res. 2012. PMID: 22693209 Free PMC article.

3

Molpher: a software framework for systematic chemical space exploration.

Hoksza D, Skoda P, Voršilák M, Svozil D. Hoksza D, et al. J Cheminform. 2014 Mar 21;6(1):7. doi: 10.1186/1758-2946-6-7. J Cheminform. 2014. PMID: 24655571 Free PMC article.

4

MultiSETTER: web server for multiple RNA structure comparison.

Čech P, Hoksza D, Svozil D. Čech P, et al. Among authors: hoksza d. BMC Bioinformatics. 2015 Aug 12;16:253. doi: 10.1186/s12859-015-0696-8. BMC Bioinformatics. 2015. PMID: 26264783 Free PMC article.

5

Multiple 3D RNA Structure Superposition Using Neighbor Joining.

Hoksza D, Svozil D. Hoksza D, et al. IEEE/ACM Trans Comput Biol Bioinform. 2015 May-Jun;12(3):520-30. doi: 10.1109/TCBB.2014.2351810. IEEE/ACM Trans Comput Biol Bioinform. 2015. PMID: 26357263

6

TRAVeLer: a tool for template-based RNA secondary structure visualization.

Elias R, Hoksza D. Elias R, et al. Among authors: hoksza d. BMC Bioinformatics. 2017 Nov 15;18(1):487. doi: 10.1186/s12859-017-1885-4. BMC Bioinformatics. 2017. PMID: 29141608 Free PMC article.

7

Utilizing knowledge base of amino acids structural neighborhoods to predict protein-protein interaction sites.

Jelínek J, Škoda P, Hoksza D. Jelínek J, et al. Among authors: hoksza d. BMC Bioinformatics. 2017 Dec 6;18(Suppl 15):492. doi: 10.1186/s12859-017-1921-4. BMC Bioinformatics. 2017. PMID: 29244012 Free PMC article.

8

MolArt: a molecular structure annotation and visualization tool.

Hoksza D, Gawron P, Ostaszewski M, Schneider R. Hoksza D, et al. Bioinformatics. 2018 Dec 1;34(23):4127-4128. doi: 10.1093/bioinformatics/bty489. Bioinformatics. 2018. PMID: 29931246 Free PMC article.

9

MINERVA API and plugins: opening molecular network analysis and visualization to the community.

Hoksza D, Gawron P, Ostaszewski M, Smula E, Schneider R. Hoksza D, et al. Bioinformatics. 2019 Nov 1;35(21):4496-4498. doi: 10.1093/bioinformatics/btz286. Bioinformatics. 2019. PMID: 31074494 Free PMC article.

10

R2DT is a framework for predicting and visualising RNA secondary structure using templates.

Sweeney BA, Hoksza D, Nawrocki EP, Ribas CE, Madeira F, Cannone JJ, Gutell R, Maddala A, Meade CD, Williams LD, Petrov AS, Chan PP, Lowe TM, Finn RD, Petrov AI. Sweeney BA, et al. Among authors: hoksza d. Nat Commun. 2021 Jun 9;12(1):3494. doi: 10.1038/s41467-021-23555-5. Nat Commun. 2021. PMID: 34108470 Free PMC article.

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