Onuchic JN - Search Results

1

Magnesium fluctuations modulate RNA dynamics in the SAM-I riboswitch.

Hayes RL, Noel JK, Mohanty U, Whitford PC, Hennelly SP, Onuchic JN, Sanbonmatsu KY. Hayes RL, et al. Among authors: onuchic jn. J Am Chem Soc. 2012 Jul 25;134(29):12043-53. doi: 10.1021/ja301454u. Epub 2012 Jul 16. J Am Chem Soc. 2012. PMID: 22612276 Free PMC article.

2

Quantifying the roughness on the free energy landscape: entropic bottlenecks and protein folding rates.

Chavez LL, Onuchic JN, Clementi C. Chavez LL, et al. Among authors: onuchic jn. J Am Chem Soc. 2004 Jul 14;126(27):8426-32. doi: 10.1021/ja049510+. J Am Chem Soc. 2004. PMID: 15237999

3

A novel disulfide bond in the SH2 Domain of the C-terminal Src kinase controls catalytic activity.

Mills JE, Whitford PC, Shaffer J, Onuchic JN, Adams JA, Jennings PA. Mills JE, et al. Among authors: onuchic jn. J Mol Biol. 2007 Feb 2;365(5):1460-8. doi: 10.1016/j.jmb.2006.10.076. Epub 2006 Oct 26. J Mol Biol. 2007. PMID: 17137590 Free PMC article.

4

Conformational transitions of adenylate kinase: switching by cracking.

Whitford PC, Miyashita O, Levy Y, Onuchic JN. Whitford PC, et al. Among authors: onuchic jn. J Mol Biol. 2007 Mar 9;366(5):1661-71. doi: 10.1016/j.jmb.2006.11.085. Epub 2006 Dec 5. J Mol Biol. 2007. PMID: 17217965 Free PMC article.

5

Mutations as trapdoors to two competing native conformations of the Rop-dimer.

Schug A, Whitford PC, Levy Y, Onuchic JN. Schug A, et al. Among authors: onuchic jn. Proc Natl Acad Sci U S A. 2007 Nov 6;104(45):17674-9. doi: 10.1073/pnas.0706077104. Epub 2007 Oct 29. Proc Natl Acad Sci U S A. 2007. PMID: 17968016 Free PMC article.

6

Conformational transitions in adenylate kinase. Allosteric communication reduces misligation.

Whitford PC, Gosavi S, Onuchic JN. Whitford PC, et al. Among authors: onuchic jn. J Biol Chem. 2008 Jan 25;283(4):2042-8. doi: 10.1074/jbc.M707632200. Epub 2007 Nov 11. J Biol Chem. 2008. PMID: 17998210 Free article.

7

Extracting function from a beta-trefoil folding motif.

Gosavi S, Whitford PC, Jennings PA, Onuchic JN. Gosavi S, et al. Among authors: onuchic jn. Proc Natl Acad Sci U S A. 2008 Jul 29;105(30):10384-9. doi: 10.1073/pnas.0801343105. Epub 2008 Jul 23. Proc Natl Acad Sci U S A. 2008. PMID: 18650393 Free PMC article.

8

An all-atom structure-based potential for proteins: bridging minimal models with all-atom empirical forcefields.

Whitford PC, Noel JK, Gosavi S, Schug A, Sanbonmatsu KY, Onuchic JN. Whitford PC, et al. Among authors: onuchic jn. Proteins. 2009 May 1;75(2):430-41. doi: 10.1002/prot.22253. Proteins. 2009. PMID: 18837035 Free PMC article.

9

Nonlocal helix formation is key to understanding S-adenosylmethionine-1 riboswitch function.

Whitford PC, Schug A, Saunders J, Hennelly SP, Onuchic JN, Sanbonmatsu KY. Whitford PC, et al. Among authors: onuchic jn. Biophys J. 2009 Jan;96(2):L7-9. doi: 10.1016/j.bpj.2008.10.033. Biophys J. 2009. PMID: 19167285 Free PMC article.

10

Energy landscape along an enzymatic reaction trajectory: hinges or cracks?

Whitford PC, Onuchic JN, Wolynes PG. Whitford PC, et al. Among authors: onuchic jn. HFSP J. 2008 Apr;2(2):61-4. doi: 10.2976/1.2894846. Epub 2008 Mar 24. HFSP J. 2008. PMID: 19404472 Free PMC article.

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