Otto C - Search Results

1

Hertel J, Bartschat S, Wintsche A, Otto C; Students of the Bioinformatics Computer Lab; Stadler PF. Hertel J, et al. Among authors: otto c. RNA Biol. 2012 Mar;9(3):231-41. doi: 10.4161/rna.18974. Epub 2012 Mar 1. RNA Biol. 2012. PMID: 22617875 Free PMC article.

2

Fast mapping of short sequences with mismatches, insertions and deletions using index structures.

Hoffmann S, Otto C, Kurtz S, Sharma CM, Khaitovich P, Vogel J, Stadler PF, Hackermüller J. Hoffmann S, et al. Among authors: otto c. PLoS Comput Biol. 2009 Sep;5(9):e1000502. doi: 10.1371/journal.pcbi.1000502. Epub 2009 Sep 11. PLoS Comput Biol. 2009. PMID: 19750212 Free PMC article.

3

Fast and sensitive mapping of bisulfite-treated sequencing data.

Otto C, Stadler PF, Hoffmann S. Otto C, et al. Bioinformatics. 2012 Jul 1;28(13):1698-704. doi: 10.1093/bioinformatics/bts254. Epub 2012 May 10. Bioinformatics. 2012. PMID: 22581174

4

Lacking alignments? The next-generation sequencing mapper segemehl revisited.

Otto C, Stadler PF, Hoffmann S. Otto C, et al. Bioinformatics. 2014 Jul 1;30(13):1837-43. doi: 10.1093/bioinformatics/btu146. Epub 2014 Mar 13. Bioinformatics. 2014. PMID: 24626854

5

Fast local fragment chaining using sum-of-pair gap costs.

Otto C, Hoffmann S, Gorodkin J, Stadler PF. Otto C, et al. Algorithms Mol Biol. 2011 Mar 18;6:4. doi: 10.1186/1748-7188-6-4. Algorithms Mol Biol. 2011. PMID: 21418573 Free PMC article.

6

metilene: fast and sensitive calling of differentially methylated regions from bisulfite sequencing data.

Jühling F, Kretzmer H, Bernhart SH, Otto C, Stadler PF, Hoffmann S. Jühling F, et al. Among authors: otto c. Genome Res. 2016 Feb;26(2):256-62. doi: 10.1101/gr.196394.115. Epub 2015 Dec 2. Genome Res. 2016. PMID: 26631489 Free PMC article.

7

Manipulating base quality scores enables variant calling from bisulfite sequencing alignments using conventional bayesian approaches.

Nunn A, Otto C, Fasold M, Stadler PF, Langenberger D. Nunn A, et al. Among authors: otto c. BMC Genomics. 2022 Jun 28;23(1):477. doi: 10.1186/s12864-022-08691-6. BMC Genomics. 2022. PMID: 35764934 Free PMC article.

8

Comprehensive benchmarking of software for mapping whole genome bisulfite data: from read alignment to DNA methylation analysis.

Nunn A, Otto C, Stadler PF, Langenberger D. Nunn A, et al. Among authors: otto c. Brief Bioinform. 2021 Sep 2;22(5):bbab021. doi: 10.1093/bib/bbab021. Brief Bioinform. 2021. PMID: 33624017 Free PMC article.

9

Erratum to: Comprehensive benchmarking of software for mapping whole genome bisulfite data: from read alignment to DNA methylation analysis.

Nunn A, Otto C, Stadler PF, Langenberger D. Nunn A, et al. Among authors: otto c. Brief Bioinform. 2021 Sep 2;22(5):bbab183. doi: 10.1093/bib/bbab183. Brief Bioinform. 2021. PMID: 33899096 Free PMC article. No abstract available.

10

A first glimpse at the genome of the Baikalian amphipod Eulimnogammarus verrucosus.

Rivarola-Duarte L, Otto C, Jühling F, Schreiber S, Bedulina D, Jakob L, Gurkov A, Axenov-Gribanov D, Sahyoun AH, Lucassen M, Hackermüller J, Hoffmann S, Sartoris F, Pörtner HO, Timofeyev M, Luckenbach T, Stadler PF. Rivarola-Duarte L, et al. Among authors: otto c. J Exp Zool B Mol Dev Evol. 2014 May;322(3):177-89. doi: 10.1002/jez.b.22560. Epub 2014 Feb 12. J Exp Zool B Mol Dev Evol. 2014. PMID: 24677529 Free article.

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