Bogdanov AA - Search Results

1

Impact of methylations of m2G966/m5C967 in 16S rRNA on bacterial fitness and translation initiation.

Burakovsky DE, Prokhorova IV, Sergiev PV, Milón P, Sergeeva OV, Bogdanov AA, Rodnina MV, Dontsova OA. Burakovsky DE, et al. Among authors: bogdanov aa. Nucleic Acids Res. 2012 Sep;40(16):7885-95. doi: 10.1093/nar/gks508. Epub 2012 May 30. Nucleic Acids Res. 2012. PMID: 22649054 Free PMC article.

2

Three widely separated positions in the 16S RNA lie in or close to the ribosomal decoding region; a site-directed cross-linking study with mRNA analogues.

Dontsova O, Dokudovskaya S, Kopylov A, Bogdanov A, Rinke-Appel J, Jünke N, Brimacombe R. Dontsova O, et al. EMBO J. 1992 Aug;11(8):3105-16. doi: 10.1002/j.1460-2075.1992.tb05383.x. EMBO J. 1992. PMID: 1379176 Free PMC article.

3

Stem-loop IV of 5S rRNA lies close to the peptidyltransferase center.

Dontsova O, Tishkov V, Dokudovskaya S, Bogdanov A, Döring T, Rinke-Appel J, Thamm S, Greuer B, Brimacombe R. Dontsova O, et al. Proc Natl Acad Sci U S A. 1994 May 10;91(10):4125-9. doi: 10.1073/pnas.91.10.4125. Proc Natl Acad Sci U S A. 1994. PMID: 7514294 Free PMC article.

4

Contacts between 16S ribosomal RNA and mRNA, within the spacer region separating the AUG initiator codon and the Shine-Dalgarno sequence; a site-directed cross-linking study.

Rinke-Appel J, Jünke N, Brimacombe R, Lavrik I, Dokudovskaya S, Dontsova O, Bogdanov A. Rinke-Appel J, et al. Nucleic Acids Res. 1994 Aug 11;22(15):3018-25. doi: 10.1093/nar/22.15.3018. Nucleic Acids Res. 1994. PMID: 8065915 Free PMC article.

5

Site-directed cross-linking of mRNA analogues to 16S ribosomal RNA; a complete scan of cross-links from all positions between '+1' and '+16' on the mRNA, downstream from the decoding site.

Rinke-Appel J, Jünke N, Brimacombe R, Dukudovskaya S, Dontsova O, Bogdanov A. Rinke-Appel J, et al. Nucleic Acids Res. 1993 Jun 25;21(12):2853-9. doi: 10.1093/nar/21.12.2853. Nucleic Acids Res. 1993. PMID: 8392709 Free PMC article.

6

Loop IV of 5S ribosomal RNA has contacts both to domain II and to domain V of the 23S RNA.

Dokudovskaya S, Dontsova O, Shpanchenko O, Bogdanov A, Brimacombe R. Dokudovskaya S, et al. RNA. 1996 Feb;2(2):146-52. RNA. 1996. PMID: 8601281 Free PMC article.

7

The environment of 5S rRNA in the ribosome: cross-links to the GTPase-associated area of 23S rRNA.

Sergiev P, Dokudovskaya S, Romanova E, Topin A, Bogdanov A, Brimacombe R, Dontsova O. Sergiev P, et al. Nucleic Acids Res. 1998 Jun 1;26(11):2519-25. doi: 10.1093/nar/26.11.2519. Nucleic Acids Res. 1998. PMID: 9592132 Free PMC article.

8

Direct localization by cryo-electron microscopy of secondary structural elements in Escherichia coli 23 S rRNA which differ from the corresponding regions in Haloarcula marismortui.

Matadeen R, Sergiev P, Leonov A, Pape T, van der Sluis E, Mueller F, Osswald M, von Knoblauch K, Brimacombe R, Bogdanov A, van Heel M, Dontsova O. Matadeen R, et al. J Mol Biol. 2001 Apr 13;307(5):1341-9. doi: 10.1006/jmbi.2001.4547. J Mol Biol. 2001. PMID: 11292346

9

How does tmRNA move through the ribosome?

Ivanov PV, Zvereva MI, Shpanchenko OV, Dontsova OA, Bogdanov AA, Aglyamova GV, Lim VI, Teraoka Y, Nierhaus KH. Ivanov PV, et al. Among authors: bogdanov aa. FEBS Lett. 2002 Mar 6;514(1):55-9. doi: 10.1016/s0014-5793(02)02310-4. FEBS Lett. 2002. PMID: 11904181 Free article.

10

Construction of the 'minimal' SRP that interacts with the translating ribosome but not with specific membrane receptors in Escherichia coli.

Avdeeva ON, Myasnikov AG, Sergiev PV, Bogdanov AA, Brimacombe R, Dontsova OA. Avdeeva ON, et al. Among authors: bogdanov aa. FEBS Lett. 2002 Mar 6;514(1):70-3. doi: 10.1016/s0014-5793(02)02332-3. FEBS Lett. 2002. PMID: 11904184 Free article.

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