Artymiuk PJ - Search Results

1

NASSAM: a server to search for and annotate tertiary interactions and motifs in three-dimensional structures of complex RNA molecules.

Hamdani HY, Appasamy SD, Willett P, Artymiuk PJ, Firdaus-Raih M. Hamdani HY, et al. Among authors: artymiuk pj. Nucleic Acids Res. 2012 Jul;40(Web Server issue):W35-41. doi: 10.1093/nar/gks513. Epub 2012 May 31. Nucleic Acids Res. 2012. PMID: 22661578 Free PMC article.

2

SPRITE and ASSAM: web servers for side chain 3D-motif searching in protein structures.

Nadzirin N, Gardiner EJ, Willett P, Artymiuk PJ, Firdaus-Raih M. Nadzirin N, et al. Among authors: artymiuk pj. Nucleic Acids Res. 2012 Jul;40(Web Server issue):W380-6. doi: 10.1093/nar/gks401. Epub 2012 May 9. Nucleic Acids Res. 2012. PMID: 22573174 Free PMC article.

3

IMAAAGINE: a webserver for searching hypothetical 3D amino acid side chain arrangements in the Protein Data Bank.

Nadzirin N, Willett P, Artymiuk PJ, Firdaus-Raih M. Nadzirin N, et al. Among authors: artymiuk pj. Nucleic Acids Res. 2013 Jul;41(Web Server issue):W432-40. doi: 10.1093/nar/gkt431. Epub 2013 May 28. Nucleic Acids Res. 2013. PMID: 23716645 Free PMC article.

4

COGNAC: a web server for searching and annotating hydrogen-bonded base interactions in RNA three-dimensional structures.

Firdaus-Raih M, Hamdani HY, Nadzirin N, Ramlan EI, Willett P, Artymiuk PJ. Firdaus-Raih M, et al. Among authors: artymiuk pj. Nucleic Acids Res. 2014 Jul;42(Web Server issue):W382-8. doi: 10.1093/nar/gku438. Epub 2014 May 15. Nucleic Acids Res. 2014. PMID: 24831543 Free PMC article.

5

Representation, searching and discovery of patterns of bases in complex RNA structures.

Harrison AM, South DR, Willett P, Artymiuk PJ. Harrison AM, et al. Among authors: artymiuk pj. J Comput Aided Mol Des. 2003 Aug;17(8):537-49. doi: 10.1023/b:jcam.0000004603.15856.32. J Comput Aided Mol Des. 2003. PMID: 14703124 Free article.

6

Novel base triples in RNA structures revealed by graph theoretical searching methods.

Firdaus-Raih M, Harrison AM, Willett P, Artymiuk PJ. Firdaus-Raih M, et al. Among authors: artymiuk pj. BMC Bioinformatics. 2011;12 Suppl 13(Suppl 13):S2. doi: 10.1186/1471-2105-12-S13-S2. Epub 2011 Nov 30. BMC Bioinformatics. 2011. PMID: 22373013 Free PMC article.

7

Searching for patterns of amino acids in 3D protein structures.

Spriggs RV, Artymiuk PJ, Willett P. Spriggs RV, et al. Among authors: artymiuk pj. J Chem Inf Comput Sci. 2003 Mar-Apr;43(2):412-21. doi: 10.1021/ci0255984. J Chem Inf Comput Sci. 2003. PMID: 12653503

8

A graph-theoretic approach to the identification of three-dimensional patterns of amino acid side-chains in protein structures.

Artymiuk PJ, Poirrette AR, Grindley HM, Rice DW, Willett P. Artymiuk PJ, et al. J Mol Biol. 1994 Oct 21;243(2):327-44. doi: 10.1006/jmbi.1994.1657. J Mol Biol. 1994. PMID: 7932758

9

Use of techniques derived from graph theory to compare secondary structure motifs in proteins.

Mitchell EM, Artymiuk PJ, Rice DW, Willett P. Mitchell EM, et al. Among authors: artymiuk pj. J Mol Biol. 1990 Mar 5;212(1):151-66. doi: 10.1016/0022-2836(90)90312-A. J Mol Biol. 1990. PMID: 2319595

10

Three-dimensional structural resemblance between the ribonuclease H and connection domains of HIV reverse transcriptase and the ATPase fold revealed using graph theoretical techniques.

Artymiuk PJ, Grindley HM, Kumar K, Rice DW, Willett P. Artymiuk PJ, et al. FEBS Lett. 1993 Jun 7;324(1):15-21. doi: 10.1016/0014-5793(93)81523-3. FEBS Lett. 1993. PMID: 7684987 Free article.

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