Firdaus-Raih M - Search Results

1

NASSAM: a server to search for and annotate tertiary interactions and motifs in three-dimensional structures of complex RNA molecules.

Hamdani HY, Appasamy SD, Willett P, Artymiuk PJ, Firdaus-Raih M. Hamdani HY, et al. Nucleic Acids Res. 2012 Jul;40(Web Server issue):W35-41. doi: 10.1093/nar/gks513. Epub 2012 May 31. Nucleic Acids Res. 2012. PMID: 22661578 Free PMC article.

2

Novel base triples in RNA structures revealed by graph theoretical searching methods.

Firdaus-Raih M, Harrison AM, Willett P, Artymiuk PJ. Firdaus-Raih M, et al. BMC Bioinformatics. 2011;12 Suppl 13(Suppl 13):S2. doi: 10.1186/1471-2105-12-S13-S2. Epub 2011 Nov 30. BMC Bioinformatics. 2011. PMID: 22373013 Free PMC article.

3

SPRITE and ASSAM: web servers for side chain 3D-motif searching in protein structures.

Nadzirin N, Gardiner EJ, Willett P, Artymiuk PJ, Firdaus-Raih M. Nadzirin N, et al. Nucleic Acids Res. 2012 Jul;40(Web Server issue):W380-6. doi: 10.1093/nar/gks401. Epub 2012 May 9. Nucleic Acids Res. 2012. PMID: 22573174 Free PMC article.

4

IMAAAGINE: a webserver for searching hypothetical 3D amino acid side chain arrangements in the Protein Data Bank.

Nadzirin N, Willett P, Artymiuk PJ, Firdaus-Raih M. Nadzirin N, et al. Nucleic Acids Res. 2013 Jul;41(Web Server issue):W432-40. doi: 10.1093/nar/gkt431. Epub 2013 May 28. Nucleic Acids Res. 2013. PMID: 23716645 Free PMC article.

5

Comparative sequence and structure analysis reveals the conservation and diversity of nucleotide positions and their associated tertiary interactions in the riboswitches.

Appasamy SD, Ramlan EI, Firdaus-Raih M. Appasamy SD, et al. PLoS One. 2013 Sep 5;8(9):e73984. doi: 10.1371/journal.pone.0073984. eCollection 2013. PLoS One. 2013. PMID: 24040136 Free PMC article.

6

COGNAC: a web server for searching and annotating hydrogen-bonded base interactions in RNA three-dimensional structures.

Firdaus-Raih M, Hamdani HY, Nadzirin N, Ramlan EI, Willett P, Artymiuk PJ. Firdaus-Raih M, et al. Nucleic Acids Res. 2014 Jul;42(Web Server issue):W382-8. doi: 10.1093/nar/gku438. Epub 2014 May 15. Nucleic Acids Res. 2014. PMID: 24831543 Free PMC article.

7

InterRNA: a database of base interactions in RNA structures.

Appasamy SD, Hamdani HY, Ramlan EI, Firdaus-Raih M. Appasamy SD, et al. Nucleic Acids Res. 2016 Jan 4;44(D1):D266-71. doi: 10.1093/nar/gkv1186. Epub 2015 Nov 8. Nucleic Acids Res. 2016. PMID: 26553798 Free PMC article.

8

Drug ReposER: a web server for predicting similar amino acid arrangements to known drug binding interfaces for potential drug repositioning.

Ab Ghani NS, Ramlan EI, Firdaus-Raih M. Ab Ghani NS, et al. Nucleic Acids Res. 2019 Jul 2;47(W1):W350-W356. doi: 10.1093/nar/gkz391. Nucleic Acids Res. 2019. PMID: 31106379 Free PMC article.

9

Regulation of Glycine Cleavage and Detoxification by a Highly Conserved Glycine Riboswitch in Burkholderia spp.

Munyati-Othman N, Appasamy SD, Damiri N, Emrizal R, Alipiah NM, Ramlan EI, Firdaus-Raih M. Munyati-Othman N, et al. Curr Microbiol. 2021 Aug;78(8):2943-2955. doi: 10.1007/s00284-021-02550-5. Epub 2021 Jun 2. Curr Microbiol. 2021. PMID: 34076709

10

Graph Theoretical Methods and Workflows for Searching and Annotation of RNA Tertiary Base Motifs and Substructures.

Emrizal R, Hamdani HY, Firdaus-Raih M. Emrizal R, et al. Int J Mol Sci. 2021 Aug 9;22(16):8553. doi: 10.3390/ijms22168553. Int J Mol Sci. 2021. PMID: 34445259 Free PMC article. Review.

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