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A pilot study of rapid benchtop sequencing of Staphylococcus aureus and Clostridium difficile for outbreak detection and surveillance.
Eyre DW, Golubchik T, Gordon NC, Bowden R, Piazza P, Batty EM, Ip CL, Wilson DJ, Didelot X, O'Connor L, Lay R, Buck D, Kearns AM, Shaw A, Paul J, Wilcox MH, Donnelly PJ, Peto TE, Walker AS, Crook DW. Eyre DW, et al. Among authors: gordon nc. BMJ Open. 2012 Jun 6;2(3):e001124. doi: 10.1136/bmjopen-2012-001124. Print 2012. BMJ Open. 2012. PMID: 22674929 Free PMC article.
Rapid antibiotic-resistance predictions from genome sequence data for Staphylococcus aureus and Mycobacterium tuberculosis.
Bradley P, Gordon NC, Walker TM, Dunn L, Heys S, Huang B, Earle S, Pankhurst LJ, Anson L, de Cesare M, Piazza P, Votintseva AA, Golubchik T, Wilson DJ, Wyllie DH, Diel R, Niemann S, Feuerriegel S, Kohl TA, Ismail N, Omar SV, Smith EG, Buck D, McVean G, Walker AS, Peto TE, Crook DW, Iqbal Z. Bradley P, et al. Among authors: gordon nc. Nat Commun. 2015 Dec 21;6:10063. doi: 10.1038/ncomms10063. Nat Commun. 2015. PMID: 26686880 Free PMC article.
Robust Prediction of Resistance to Trimethoprim in Staphylococcus aureus.
Fowler PW, Cole K, Gordon NC, Kearns AM, Llewelyn MJ, Peto TEA, Crook DW, Walker AS. Fowler PW, et al. Among authors: gordon nc. Cell Chem Biol. 2018 Mar 15;25(3):339-349.e4. doi: 10.1016/j.chembiol.2017.12.009. Epub 2018 Jan 4. Cell Chem Biol. 2018. PMID: 29307840 Free article.
Prediction of Staphylococcus aureus antimicrobial resistance by whole-genome sequencing.
Gordon NC, Price JR, Cole K, Everitt R, Morgan M, Finney J, Kearns AM, Pichon B, Young B, Wilson DJ, Llewelyn MJ, Paul J, Peto TE, Crook DW, Walker AS, Golubchik T. Gordon NC, et al. J Clin Microbiol. 2014 Apr;52(4):1182-91. doi: 10.1128/JCM.03117-13. Epub 2014 Feb 5. J Clin Microbiol. 2014. PMID: 24501024 Free PMC article.
Whole-Genome Sequencing Reveals the Contribution of Long-Term Carriers in Staphylococcus aureus Outbreak Investigation.
Gordon NC, Pichon B, Golubchik T, Wilson DJ, Paul J, Blanc DS, Cole K, Collins J, Cortes N, Cubbon M, Gould FK, Jenks PJ, Llewelyn M, Nash JQ, Orendi JM, Paranthaman K, Price JR, Senn L, Thomas HL, Wyllie S, Crook DW, Peto TEA, Walker AS, Kearns AM. Gordon NC, et al. J Clin Microbiol. 2017 Jul;55(7):2188-2197. doi: 10.1128/JCM.00363-17. Epub 2017 May 3. J Clin Microbiol. 2017. PMID: 28468851 Free PMC article.
Antimicrobial resistance in commensal opportunistic pathogens isolated from non-sterile sites can be an effective proxy for surveillance in bloodstream infections.
Vihta KD, Gordon NC, Stoesser N, Quan TP, Tyrrell CSB, Vongsouvath M, Ashley EA, Chansamouth V, Turner P, Ling CL, Eyre DW, White NJ, Crook D, Peto TEA, Walker AS. Vihta KD, et al. Among authors: gordon nc. Sci Rep. 2021 Dec 3;11(1):23359. doi: 10.1038/s41598-021-02755-5. Sci Rep. 2021. PMID: 34862445 Free PMC article.
Identifying lineage effects when controlling for population structure improves power in bacterial association studies.
Earle SG, Wu CH, Charlesworth J, Stoesser N, Gordon NC, Walker TM, Spencer CCA, Iqbal Z, Clifton DA, Hopkins KL, Woodford N, Smith EG, Ismail N, Llewelyn MJ, Peto TE, Crook DW, McVean G, Walker AS, Wilson DJ. Earle SG, et al. Among authors: gordon nc. Nat Microbiol. 2016 Apr 4;1:16041. doi: 10.1038/nmicrobiol.2016.41. Nat Microbiol. 2016. PMID: 27572646 Free PMC article.
Accuracy of Different Bioinformatics Methods in Detecting Antibiotic Resistance and Virulence Factors from Staphylococcus aureus Whole-Genome Sequences.
Mason A, Foster D, Bradley P, Golubchik T, Doumith M, Gordon NC, Pichon B, Iqbal Z, Staves P, Crook D, Walker AS, Kearns A, Peto T. Mason A, et al. Among authors: gordon nc. J Clin Microbiol. 2018 Aug 27;56(9):e01815-17. doi: 10.1128/JCM.01815-17. Print 2018 Sep. J Clin Microbiol. 2018. PMID: 29925638 Free PMC article.
Antimicrobial resistance determinants are associated with Staphylococcus aureus bacteraemia and adaptation to the healthcare environment: a bacterial genome-wide association study.
Young BC, Wu CH, Charlesworth J, Earle S, Price JR, Gordon NC, Cole K, Dunn L, Liu E, Oakley S, Godwin H, Fung R, Miller R, Knox K, Votintseva A, Quan TP, Tilley R, Scarborough M, Crook DW, Peto TE, Walker AS, Llewelyn MJ, Wilson DJ. Young BC, et al. Among authors: gordon nc. Microb Genom. 2021 Nov;7(11):000700. doi: 10.1099/mgen.0.000700. Microb Genom. 2021. PMID: 34812717 Free PMC article.
104 results