Ode H - Search Results

1

Molecular and enzymatic characterization of XMRV protease by a cell-free proteolytic analysis.

Matsunaga S, Sawasaki T, Ode H, Morishita R, Furukawa A, Sakuma R, Sugiura W, Sato H, Katahira M, Takaori-Kondo A, Yamamoto N, Ryo A. Matsunaga S, et al. Among authors: ode h. J Proteomics. 2012 Aug 3;75(15):4863-73. doi: 10.1016/j.jprot.2012.05.047. Epub 2012 Jun 9. J Proteomics. 2012. PMID: 22687250

2

The phosphorylation of HIV-1 Gag by atypical protein kinase C facilitates viral infectivity by promoting Vpr incorporation into virions.

Kudoh A, Takahama S, Sawasaki T, Ode H, Yokoyama M, Okayama A, Ishikawa A, Miyakawa K, Matsunaga S, Kimura H, Sugiura W, Sato H, Hirano H, Ohno S, Yamamoto N, Ryo A. Kudoh A, et al. Among authors: ode h. Retrovirology. 2014 Jan 22;11:9. doi: 10.1186/1742-4690-11-9. Retrovirology. 2014. PMID: 24447338 Free PMC article.

3

Mechanism of drug resistance due to N88S in CRF01_AE HIV-1 protease, analyzed by molecular dynamics simulations.

Ode H, Matsuyama S, Hata M, Hoshino T, Kakizawa J, Sugiura W. Ode H, et al. J Med Chem. 2007 Apr 19;50(8):1768-77. doi: 10.1021/jm061158i. Epub 2007 Mar 17. J Med Chem. 2007. PMID: 17367119

4

Computational characterization of structural role of the non-active site mutation M36I of human immunodeficiency virus type 1 protease.

Ode H, Matsuyama S, Hata M, Neya S, Kakizawa J, Sugiura W, Hoshino T. Ode H, et al. J Mol Biol. 2007 Jul 13;370(3):598-607. doi: 10.1016/j.jmb.2007.04.081. Epub 2007 May 10. J Mol Biol. 2007. PMID: 17524421

5

Structural and energetic analysis on the complexes of clinically isolated subtype C HIV-1 proteases and approved inhibitors by molecular dynamics simulation.

Matsuyama S, Aydan A, Ode H, Hata M, Sugiura W, Hoshino T. Matsuyama S, et al. Among authors: ode h. J Phys Chem B. 2010 Jan 14;114(1):521-30. doi: 10.1021/jp908314f. J Phys Chem B. 2010. PMID: 20055526

6

Molecular dynamics simulation in virus research.

Ode H, Nakashima M, Kitamura S, Sugiura W, Sato H. Ode H, et al. Front Microbiol. 2012 Jul 19;3:258. doi: 10.3389/fmicb.2012.00258. eCollection 2012. Front Microbiol. 2012. PMID: 22833741 Free PMC article.

7

Within-host co-evolution of Gag P453L and protease D30N/N88D demonstrates virological advantage in a highly protease inhibitor-exposed HIV-1 case.

Shibata J, Sugiura W, Ode H, Iwatani Y, Sato H, Tsang H, Matsuda M, Hasegawa N, Ren F, Tanaka H. Shibata J, et al. Among authors: ode h. Antiviral Res. 2011 Apr;90(1):33-41. doi: 10.1016/j.antiviral.2011.02.004. Epub 2011 Feb 19. Antiviral Res. 2011. PMID: 21338625

8

Generation of rhesus macaque-tropic HIV-1 clones that are resistant to major anti-HIV-1 restriction factors.

Nomaguchi M, Yokoyama M, Kono K, Nakayama EE, Shioda T, Doi N, Fujiwara S, Saito A, Akari H, Miyakawa K, Ryo A, Ode H, Iwatani Y, Miura T, Igarashi T, Sato H, Adachi A. Nomaguchi M, et al. Among authors: ode h. J Virol. 2013 Nov;87(21):11447-61. doi: 10.1128/JVI.01549-13. Epub 2013 Aug 21. J Virol. 2013. PMID: 23966385 Free PMC article.

9

Identification of folding preferences of cleavage junctions of HIV-1 precursor proteins for regulation of cleavability.

Ode H, Yokoyama M, Kanda T, Sato H. Ode H, et al. J Mol Model. 2011 Feb;17(2):391-9. doi: 10.1007/s00894-010-0739-z. Epub 2010 May 18. J Mol Model. 2011. PMID: 20480379

10

Computational simulations of HIV-1 proteases--multi-drug resistance due to nonactive site mutation L90M.

Ode H, Neya S, Hata M, Sugiura W, Hoshino T. Ode H, et al. J Am Chem Soc. 2006 Jun 21;128(24):7887-95. doi: 10.1021/ja060682b. J Am Chem Soc. 2006. PMID: 16771502

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