Ma J - Search Results

1

Search for chromosome rearrangements: new approaches toward discovery of novel translocations in head and neck squamous cell carcinoma.

Wang VW, Laborde RR, Asmann YW, Li Y, Ma J, Eckloff BW, Tombers NM, Olsen SM, Moore EJ, Olsen KD, Smith DI. Wang VW, et al. Among authors: ma j. Head Neck. 2013 Jun;35(6):831-5. doi: 10.1002/hed.23037. Epub 2012 Jul 17. Head Neck. 2013. PMID: 22807096

2

FusionHunter: identifying fusion transcripts in cancer using paired-end RNA-seq.

Li Y, Chien J, Smith DI, Ma J. Li Y, et al. Among authors: ma j. Bioinformatics. 2011 Jun 15;27(12):1708-10. doi: 10.1093/bioinformatics/btr265. Epub 2011 May 5. Bioinformatics. 2011. PMID: 21546395

3

Allele-Specific Quantification of Structural Variations in Cancer Genomes.

Li Y, Zhou S, Schwartz DC, Ma J. Li Y, et al. Among authors: ma j. Cell Syst. 2016 Jul;3(1):21-34. doi: 10.1016/j.cels.2016.05.007. Epub 2016 Jul 21. Cell Syst. 2016. PMID: 27453446 Free PMC article.

4

Comparative Analysis of Brain and Fat Body Gene Splicing Patterns in the Honey Bee, Apis mellifera.

Kannan K, Shook M, Li Y, Robinson GE, Ma J. Kannan K, et al. Among authors: ma j. G3 (Bethesda). 2019 Apr 9;9(4):1055-1063. doi: 10.1534/g3.118.200857. G3 (Bethesda). 2019. PMID: 30792192 Free PMC article.

5

UnSplicer: mapping spliced RNA-Seq reads in compact genomes and filtering noisy splicing.

Burns PD, Li Y, Ma J, Borodovsky M. Burns PD, et al. Among authors: ma j. Nucleic Acids Res. 2014 Feb;42(4):e25. doi: 10.1093/nar/gkt1141. Epub 2013 Nov 19. Nucleic Acids Res. 2014. PMID: 24259430 Free PMC article.

6

TrueSight: a new algorithm for splice junction detection using RNA-seq.

Li Y, Li-Byarlay H, Burns P, Borodovsky M, Robinson GE, Ma J. Li Y, et al. Among authors: ma j. Nucleic Acids Res. 2013 Feb 1;41(4):e51. doi: 10.1093/nar/gks1311. Epub 2012 Dec 18. Nucleic Acids Res. 2013. PMID: 23254332 Free PMC article.

7

Identifying micro-inversions using high-throughput sequencing reads.

He F, Li Y, Tang YH, Ma J, Zhu H. He F, et al. Among authors: ma j. BMC Genomics. 2016 Jan 11;17 Suppl 1(Suppl 1):4. doi: 10.1186/s12864-015-2305-7. BMC Genomics. 2016. PMID: 26818118 Free PMC article.

8

RNA interference knockdown of DNA methyl-transferase 3 affects gene alternative splicing in the honey bee.

Li-Byarlay H, Li Y, Stroud H, Feng S, Newman TC, Kaneda M, Hou KK, Worley KC, Elsik CG, Wickline SA, Jacobsen SE, Ma J, Robinson GE. Li-Byarlay H, et al. Among authors: ma j. Proc Natl Acad Sci U S A. 2013 Jul 30;110(31):12750-5. doi: 10.1073/pnas.1310735110. Epub 2013 Jul 12. Proc Natl Acad Sci U S A. 2013. PMID: 23852726 Free PMC article.

9

Single-molecule analysis reveals widespread structural variation in multiple myeloma.

Gupta A, Place M, Goldstein S, Sarkar D, Zhou S, Potamousis K, Kim J, Flanagan C, Li Y, Newton MA, Callander NS, Hematti P, Bresnick EH, Ma J, Asimakopoulos F, Schwartz DC. Gupta A, et al. Among authors: ma j. Proc Natl Acad Sci U S A. 2015 Jun 23;112(25):7689-94. doi: 10.1073/pnas.1418577112. Epub 2015 Jun 8. Proc Natl Acad Sci U S A. 2015. PMID: 26056298 Free PMC article.

10

Transcriptional regulation of autophagy by an FXR-CREB axis.

Seok S, Fu T, Choi SE, Li Y, Zhu R, Kumar S, Sun X, Yoon G, Kang Y, Zhong W, Ma J, Kemper B, Kemper JK. Seok S, et al. Among authors: ma j. Nature. 2014 Dec 4;516(7529):108-11. doi: 10.1038/nature13949. Epub 2014 Nov 12. Nature. 2014. PMID: 25383523 Free PMC article.

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