Dennis JH - Search Results

1

Chromatin-interaction compartment switch at developmentally regulated chromosomal domains reveals an unusual principle of chromatin folding.

Takebayashi S, Dileep V, Ryba T, Dennis JH, Gilbert DM. Takebayashi S, et al. Among authors: dennis jh. Proc Natl Acad Sci U S A. 2012 Jul 31;109(31):12574-9. doi: 10.1073/pnas.1207185109. Epub 2012 Jul 17. Proc Natl Acad Sci U S A. 2012. PMID: 22807480 Free PMC article.

2

Topologically associating domains are stable units of replication-timing regulation.

Pope BD, Ryba T, Dileep V, Yue F, Wu W, Denas O, Vera DL, Wang Y, Hansen RS, Canfield TK, Thurman RE, Cheng Y, Gülsoy G, Dennis JH, Snyder MP, Stamatoyannopoulos JA, Taylor J, Hardison RC, Kahveci T, Ren B, Gilbert DM. Pope BD, et al. Among authors: dennis jh. Nature. 2014 Nov 20;515(7527):402-5. doi: 10.1038/nature13986. Nature. 2014. PMID: 25409831 Free PMC article.

3

Pre-replication complex proteins assemble at regions of low nucleosome occupancy within the Chinese hamster dihydrofolate reductase initiation zone.

Lubelsky Y, Sasaki T, Kuipers MA, Lucas I, Le Beau MM, Carignon S, Debatisse M, Prinz JA, Dennis JH, Gilbert DM. Lubelsky Y, et al. Among authors: dennis jh. Nucleic Acids Res. 2011 Apr;39(8):3141-55. doi: 10.1093/nar/gkq1276. Epub 2010 Dec 9. Nucleic Acids Res. 2011. PMID: 21148149 Free PMC article.

4

Regulated large-scale nucleosome density patterns and precise nucleosome positioning correlate with V(D)J recombination.

Pulivarthy SR, Lion M, Kuzu G, Matthews AG, Borowsky ML, Morris J, Kingston RE, Dennis JH, Tolstorukov MY, Oettinger MA. Pulivarthy SR, et al. Among authors: dennis jh. Proc Natl Acad Sci U S A. 2016 Oct 18;113(42):E6427-E6436. doi: 10.1073/pnas.1605543113. Epub 2016 Oct 3. Proc Natl Acad Sci U S A. 2016. PMID: 27698124 Free PMC article.

5

Genome-wide prediction of nucleosome occupancy in maize reveals plant chromatin structural features at genes and other elements at multiple scales.

Fincher JA, Vera DL, Hughes DD, McGinnis KM, Dennis JH, Bass HW. Fincher JA, et al. Among authors: dennis jh. Plant Physiol. 2013 Jun;162(2):1127-41. doi: 10.1104/pp.113.216432. Epub 2013 Apr 9. Plant Physiol. 2013. PMID: 23572549 Free PMC article.

6

Chromatin patterns associated with lung adenocarcinoma progression.

Druliner BR, Fincher JA, Sexton BS, Vera DL, Roche M, Lyle S, Dennis JH. Druliner BR, et al. Among authors: dennis jh. Cell Cycle. 2013 May 15;12(10):1536-43. doi: 10.4161/cc.24664. Epub 2013 Apr 17. Cell Cycle. 2013. PMID: 23598721 Free PMC article.

7

Differential nuclease sensitivity profiling of chromatin reveals biochemical footprints coupled to gene expression and functional DNA elements in maize.

Vera DL, Madzima TF, Labonne JD, Alam MP, Hoffman GG, Girimurugan SB, Zhang J, McGinnis KM, Dennis JH, Bass HW. Vera DL, et al. Among authors: dennis jh. Plant Cell. 2014 Oct;26(10):3883-93. doi: 10.1105/tpc.114.130609. Epub 2014 Oct 31. Plant Cell. 2014. PMID: 25361955 Free PMC article.

8

Multiple roles of H2A.Z in regulating promoter chromatin architecture in human cells.

Cole L, Kurscheid S, Nekrasov M, Domaschenz R, Vera DL, Dennis JH, Tremethick DJ. Cole L, et al. Among authors: dennis jh. Nat Commun. 2021 May 5;12(1):2524. doi: 10.1038/s41467-021-22688-x. Nat Commun. 2021. PMID: 33953180 Free PMC article.

9

MNase Profiling of Promoter Chromatin in Salmonella typhimurium-Stimulated GM12878 Cells Reveals Dynamic and Response-Specific Nucleosome Architecture.

Cole L, Dennis J. Cole L, et al. G3 (Bethesda). 2020 Jul 7;10(7):2171-2178. doi: 10.1534/g3.120.401266. G3 (Bethesda). 2020. PMID: 32404364 Free PMC article.

10

The spring-loaded genome: nucleosome redistributions are widespread, transient, and DNA-directed.

Sexton BS, Avey D, Druliner BR, Fincher JA, Vera DL, Grau DJ, Borowsky ML, Gupta S, Girimurugan SB, Chicken E, Zhang J, Noble WS, Zhu F, Kingston RE, Dennis JH. Sexton BS, et al. Among authors: dennis jh. Genome Res. 2014 Feb;24(2):251-9. doi: 10.1101/gr.160150.113. Epub 2013 Dec 5. Genome Res. 2014. PMID: 24310001 Free PMC article.

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