Maticzka D - Search Results

1

Characterization of CRISPR RNA processing in Clostridium thermocellum and Methanococcus maripaludis.

Richter H, Zoephel J, Schermuly J, Maticzka D, Backofen R, Randau L. Richter H, et al. Among authors: maticzka d. Nucleic Acids Res. 2012 Oct;40(19):9887-96. doi: 10.1093/nar/gks737. Epub 2012 Aug 8. Nucleic Acids Res. 2012. PMID: 22879377 Free PMC article.

2

Classifying proteinlike sequences in arbitrary lattice protein models using LatPack.

Mann M, Maticzka D, Saunders R, Backofen R. Mann M, et al. Among authors: maticzka d. HFSP J. 2008 Dec;2(6):396-404. doi: 10.2976/1.3027681. Epub 2008 Nov 26. HFSP J. 2008. PMID: 19436498 Free PMC article.

3

Global or local? Predicting secondary structure and accessibility in mRNAs.

Lange SJ, Maticzka D, Möhl M, Gagnon JN, Brown CM, Backofen R. Lange SJ, et al. Among authors: maticzka d. Nucleic Acids Res. 2012 Jul;40(12):5215-26. doi: 10.1093/nar/gks181. Epub 2012 Feb 28. Nucleic Acids Res. 2012. PMID: 22373926 Free PMC article.

4

Tandem stem-loops in roX RNAs act together to mediate X chromosome dosage compensation in Drosophila.

Ilik IA, Quinn JJ, Georgiev P, Tavares-Cadete F, Maticzka D, Toscano S, Wan Y, Spitale RC, Luscombe N, Backofen R, Chang HY, Akhtar A. Ilik IA, et al. Among authors: maticzka d. Mol Cell. 2013 Jul 25;51(2):156-73. doi: 10.1016/j.molcel.2013.07.001. Mol Cell. 2013. PMID: 23870142 Free PMC article.

5

GraphProt: modeling binding preferences of RNA-binding proteins.

Maticzka D, Lange SJ, Costa F, Backofen R. Maticzka D, et al. Genome Biol. 2014 Jan 22;15(1):R17. doi: 10.1186/gb-2014-15-1-r17. Genome Biol. 2014. PMID: 24451197 Free PMC article.

6

SimiRa: A tool to identify coregulation between microRNAs and RNA-binding proteins.

Preusse M, Marr C, Saunders S, Maticzka D, Lickert H, Backofen R, Theis F. Preusse M, et al. Among authors: maticzka d. RNA Biol. 2015;12(9):998-1009. doi: 10.1080/15476286.2015.1068496. RNA Biol. 2015. PMID: 26383775 Free PMC article.

7

DHX9 suppresses RNA processing defects originating from the Alu invasion of the human genome.

Aktaş T, Avşar Ilık İ, Maticzka D, Bhardwaj V, Pessoa Rodrigues C, Mittler G, Manke T, Backofen R, Akhtar A. Aktaş T, et al. Among authors: maticzka d. Nature. 2017 Apr 6;544(7648):115-119. doi: 10.1038/nature21715. Epub 2017 Mar 29. Nature. 2017. PMID: 28355180

8

A mutually exclusive stem-loop arrangement in roX2 RNA is essential for X-chromosome regulation in Drosophila.

Ilik IA, Maticzka D, Georgiev P, Gutierrez NM, Backofen R, Akhtar A. Ilik IA, et al. Among authors: maticzka d. Genes Dev. 2017 Oct 1;31(19):1973-1987. doi: 10.1101/gad.304600.117. Epub 2017 Oct 24. Genes Dev. 2017. PMID: 29066499 Free PMC article.

9

uvCLAP is a fast and non-radioactive method to identify in vivo targets of RNA-binding proteins.

Maticzka D, Ilik IA, Aktas T, Backofen R, Akhtar A. Maticzka D, et al. Nat Commun. 2018 Mar 20;9(1):1142. doi: 10.1038/s41467-018-03575-4. Nat Commun. 2018. PMID: 29559621 Free PMC article.

10

The RNA-binding protein ARPP21 controls dendritic branching by functionally opposing the miRNA it hosts.

Rehfeld F, Maticzka D, Grosser S, Knauff P, Eravci M, Vida I, Backofen R, Wulczyn FG. Rehfeld F, et al. Among authors: maticzka d. Nat Commun. 2018 Mar 26;9(1):1235. doi: 10.1038/s41467-018-03681-3. Nat Commun. 2018. PMID: 29581509 Free PMC article.

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