Gitter A - Search Results

1

DREM 2.0: Improved reconstruction of dynamic regulatory networks from time-series expression data.

Schulz MH, Devanny WE, Gitter A, Zhong S, Ernst J, Bar-Joseph Z. Schulz MH, et al. Among authors: gitter a. BMC Syst Biol. 2012 Aug 16;6:104. doi: 10.1186/1752-0509-6-104. BMC Syst Biol. 2012. PMID: 22897824 Free PMC article.

2

Application of Traditional Vaccine Development Strategies to SARS-CoV-2.

Rando HM, Lordan R, Lee AJ, Naik A, Wellhausen N, Sell E, Kolla L; COVID-19 Review Consortium; Gitter A, Greene CS. Rando HM, et al. Among authors: gitter a. mSystems. 2023 Apr 27;8(2):e0092722. doi: 10.1128/msystems.00927-22. Epub 2023 Mar 2. mSystems. 2023. PMID: 36861991 Free PMC article. Review.

3

Backup in gene regulatory networks explains differences between binding and knockout results.

Gitter A, Siegfried Z, Klutstein M, Fornes O, Oliva B, Simon I, Bar-Joseph Z. Gitter A, et al. Mol Syst Biol. 2009;5:276. doi: 10.1038/msb.2009.33. Epub 2009 Jun 16. Mol Syst Biol. 2009. PMID: 19536199 Free PMC article.

4

Computational methods for analyzing dynamic regulatory networks.

Gitter A, Lu Y, Bar-Joseph Z. Gitter A, et al. Methods Mol Biol. 2010;674:419-41. doi: 10.1007/978-1-60761-854-6_24. Methods Mol Biol. 2010. PMID: 20827605 Free PMC article. Review.

5

Discovering pathways by orienting edges in protein interaction networks.

Gitter A, Klein-Seetharaman J, Gupta A, Bar-Joseph Z. Gitter A, et al. Nucleic Acids Res. 2011 Mar;39(4):e22. doi: 10.1093/nar/gkq1207. Epub 2010 Nov 24. Nucleic Acids Res. 2011. PMID: 21109539 Free PMC article.

6

Studying and modelling dynamic biological processes using time-series gene expression data.

Bar-Joseph Z, Gitter A, Simon I. Bar-Joseph Z, et al. Among authors: gitter a. Nat Rev Genet. 2012 Jul 18;13(8):552-64. doi: 10.1038/nrg3244. Nat Rev Genet. 2012. PMID: 22805708 Review.

7

A network-based approach for predicting missing pathway interactions.

Navlakha S, Gitter A, Bar-Joseph Z. Navlakha S, et al. Among authors: gitter a. PLoS Comput Biol. 2012;8(8):e1002640. doi: 10.1371/journal.pcbi.1002640. Epub 2012 Aug 16. PLoS Comput Biol. 2012. PMID: 22916002 Free PMC article.

8

Linking the signaling cascades and dynamic regulatory networks controlling stress responses.

Gitter A, Carmi M, Barkai N, Bar-Joseph Z. Gitter A, et al. Genome Res. 2013 Feb;23(2):365-76. doi: 10.1101/gr.138628.112. Epub 2012 Oct 11. Genome Res. 2013. PMID: 23064748 Free PMC article.

9

Identifying proteins controlling key disease signaling pathways.

Gitter A, Bar-Joseph Z. Gitter A, et al. Bioinformatics. 2013 Jul 1;29(13):i227-36. doi: 10.1093/bioinformatics/btt241. Bioinformatics. 2013. PMID: 23812988 Free PMC article.

10

Multitask learning of signaling and regulatory networks with application to studying human response to flu.

Jain S, Gitter A, Bar-Joseph Z. Jain S, et al. Among authors: gitter a. PLoS Comput Biol. 2014 Dec 18;10(12):e1003943. doi: 10.1371/journal.pcbi.1003943. eCollection 2014 Dec. PLoS Comput Biol. 2014. PMID: 25522349 Free PMC article.

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