Tyo K - Search Results

1

Measuring cation dependent DNA polymerase fidelity landscapes by deep sequencing.

Zamft BM, Marblestone AH, Kording K, Schmidt D, Martin-Alarcon D, Tyo K, Boyden ES, Church G. Zamft BM, et al. Among authors: tyo k. PLoS One. 2012;7(8):e43876. doi: 10.1371/journal.pone.0043876. Epub 2012 Aug 22. PLoS One. 2012. PMID: 22928047 Free PMC article.

2

Synthetic biology: emerging methodologies to catalyze the metabolic engineering design cycle.

Smolke CD, Tyo KE. Smolke CD, et al. Metab Eng. 2012 May;14(3):187-8. doi: 10.1016/j.ymben.2012.03.009. Epub 2012 Mar 23. Metab Eng. 2012. PMID: 22465683 No abstract available.

3

Meta-omic profiling reveals ubiquity of genes encoding for the nitrogen-rich biopolymer cyanophycin in activated sludge microbiomes.

Farmer M, Rajasabhai R, Tarpeh W, Tyo K, Wells G. Farmer M, et al. Among authors: tyo k. Front Microbiol. 2023 Nov 16;14:1287491. doi: 10.3389/fmicb.2023.1287491. eCollection 2023. Front Microbiol. 2023. PMID: 38033562 Free PMC article.

4

Aromatic natural products synthesis from aromatic lignin monomers using Acinetobacter baylyi ADP1.

Biggs BW, Tyo KEJ. Biggs BW, et al. bioRxiv [Preprint]. 2023 Aug 24:2023.08.24.554694. doi: 10.1101/2023.08.24.554694. bioRxiv. 2023. PMID: 37662333 Free PMC article. Preprint.

5

A dynamic kinetic model captures cell-free metabolism for improved butanol production.

Martin JP, Rasor BJ, DeBonis J, Karim AS, Jewett MC, Tyo KEJ, Broadbelt LJ. Martin JP, et al. Metab Eng. 2023 Mar;76:133-145. doi: 10.1016/j.ymben.2023.01.009. Epub 2023 Jan 29. Metab Eng. 2023. PMID: 36724840

6

Coupling chemistry and biology for the synthesis of advanced bioproducts.

Chainani Y, Bonnanzio G, Tyo KE, Broadbelt LJ. Chainani Y, et al. Curr Opin Biotechnol. 2023 Dec;84:102992. doi: 10.1016/j.copbio.2023.102992. Epub 2023 Sep 7. Curr Opin Biotechnol. 2023. PMID: 37688985 Review.

7

Pickaxe: a Python library for the prediction of novel metabolic reactions.

Shebek KM, Strutz J, Broadbelt LJ, Tyo KEJ. Shebek KM, et al. BMC Bioinformatics. 2023 Mar 22;24(1):106. doi: 10.1186/s12859-023-05149-8. BMC Bioinformatics. 2023. PMID: 36949401 Free PMC article.

8

A massively parallel in vivo assay of TdT mutants yields variants with altered nucleotide insertion biases.

Carlson CK, Loveless TB, Milisavljevic M, Kelly PI, Mills JH, Tyo KEJ, Liu CC. Carlson CK, et al. Among authors: tyo kej. bioRxiv [Preprint]. 2024 Jun 11:2024.06.11.598561. doi: 10.1101/2024.06.11.598561. bioRxiv. 2024. Update in: ACS Synth Biol. 2024 Oct 18;13(10):3326-3343. doi: 10.1021/acssynbio.4c00414 PMID: 38915690 Free PMC article. Updated. Preprint.

9

Statistical analysis of molecular signal recording.

Glaser JI, Zamft BM, Marblestone AH, Moffitt JR, Tyo K, Boyden ES, Church G, Kording KP. Glaser JI, et al. Among authors: tyo k. PLoS Comput Biol. 2013;9(7):e1003145. doi: 10.1371/journal.pcbi.1003145. Epub 2013 Jul 18. PLoS Comput Biol. 2013. PMID: 23874187 Free PMC article.

10

Nucleotide-time alignment for molecular recorders.

Cybulski TR, Boyden ES, Church GM, Tyo KEJ, Kording KP. Cybulski TR, et al. PLoS Comput Biol. 2017 May 1;13(5):e1005483. doi: 10.1371/journal.pcbi.1005483. eCollection 2017 May. PLoS Comput Biol. 2017. PMID: 28459860 Free PMC article.

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