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Rapid hybrid de novo assembly of a microbial genome using only short reads: Corynebacterium pseudotuberculosis I19 as a case study.
Cerdeira LT, Carneiro AR, Ramos RT, de Almeida SS, D'Afonseca V, Schneider MP, Baumbach J, Tauch A, McCulloch JA, Azevedo VA, Silva A. Cerdeira LT, et al. Among authors: carneiro ar. J Microbiol Methods. 2011 Aug;86(2):218-23. doi: 10.1016/j.mimet.2011.05.008. Epub 2011 May 18. J Microbiol Methods. 2011. PMID: 21620904 Free article.
High efficiency application of a mate-paired library from next-generation sequencing to postlight sequencing: Corynebacterium pseudotuberculosis as a case study for microbial de novo genome assembly.
Ramos RT, Carneiro AR, de Castro Soares S, Barbosa S, Varuzza L, Orabona G, Tauch A, Azevedo V, Schneider MP, Silva A. Ramos RT, et al. Among authors: carneiro ar. J Microbiol Methods. 2013 Dec;95(3):441-7. doi: 10.1016/j.mimet.2013.06.006. Epub 2013 Jun 21. J Microbiol Methods. 2013. PMID: 23792707
Simplifier: a web tool to eliminate redundant NGS contigs.
Ramos RT, Carneiro AR, Azevedo V, Schneider MP, Barh D, Silva A. Ramos RT, et al. Among authors: carneiro ar. Bioinformation. 2012;8(20):996-9. doi: 10.6026/97320630008996. Epub 2012 Oct 13. Bioinformation. 2012. PMID: 23275695 Free PMC article.
The Corynebacterium pseudotuberculosis in silico predicted pan-exoproteome.
Santos AR, Carneiro A, Gala-García A, Pinto A, Barh D, Barbosa E, Aburjaile F, Dorella F, Rocha F, Guimarães L, Zurita-Turk M, Ramos R, Almeida S, Soares S, Pereira U, Abreu VC, Silva A, Miyoshi A, Azevedo V. Santos AR, et al. Among authors: carneiro a. BMC Genomics. 2012;13 Suppl 5(Suppl 5):S6. doi: 10.1186/1471-2164-13-S5-S6. Epub 2012 Oct 19. BMC Genomics. 2012. PMID: 23095951 Free PMC article.
Circulation of hantaviruses in the influence area of the Cuiabá-Santarém Highway.
Medeiros DB, da Rosa ES, Marques A, Simith DB, Carneiro AR, Chiang JO, Prazeres IT, Vasconcelos PF, Nunes MR. Medeiros DB, et al. Among authors: carneiro ar. Mem Inst Oswaldo Cruz. 2010 Aug;105(5):665-71. doi: 10.1590/s0074-02762010000500011. Mem Inst Oswaldo Cruz. 2010. PMID: 20835614 Free article.
908 results