Collins PJ - Search Results

1

Functional analysis of transcription factor binding sites in human promoters.

Whitfield TW, Wang J, Collins PJ, Partridge EC, Aldred SF, Trinklein ND, Myers RM, Weng Z. Whitfield TW, et al. Among authors: collins pj. Genome Biol. 2012 Sep 26;13(9):R50. doi: 10.1186/gb-2012-13-9-r50. Genome Biol. 2012. PMID: 22951020 Free PMC article.

2

Transcription factor binding and modified histones in human bidirectional promoters.

Lin JM, Collins PJ, Trinklein ND, Fu Y, Xi H, Myers RM, Weng Z. Lin JM, et al. Among authors: collins pj. Genome Res. 2007 Jun;17(6):818-27. doi: 10.1101/gr.5623407. Genome Res. 2007. PMID: 17568000 Free PMC article.

3

Integrated analysis of experimental data sets reveals many novel promoters in 1% of the human genome.

Trinklein ND, Karaöz U, Wu J, Halees A, Force Aldred S, Collins PJ, Zheng D, Zhang ZD, Gerstein MB, Snyder M, Myers RM, Weng Z. Trinklein ND, et al. Among authors: collins pj. Genome Res. 2007 Jun;17(6):720-31. doi: 10.1101/gr.5716607. Genome Res. 2007. PMID: 17567992 Free PMC article.

4

The ets-related transcription factor GABP directs bidirectional transcription.

Collins PJ, Kobayashi Y, Nguyen L, Trinklein ND, Myers RM. Collins PJ, et al. PLoS Genet. 2007 Nov;3(11):e208. doi: 10.1371/journal.pgen.0030208. PLoS Genet. 2007. PMID: 18020712 Free PMC article.

5

An integrated encyclopedia of DNA elements in the human genome.

ENCODE Project Consortium. ENCODE Project Consortium. Nature. 2012 Sep 6;489(7414):57-74. doi: 10.1038/nature11247. Nature. 2012. PMID: 22955616 Free PMC article.

6

Two-tiered approach identifies a network of cancer and liver disease-related genes regulated by miR-122.

Boutz DR, Collins PJ, Suresh U, Lu M, Ramírez CM, Fernández-Hernando C, Huang Y, Abreu Rde S, Le SY, Shapiro BA, Liu AM, Luk JM, Aldred SF, Trinklein ND, Marcotte EM, Penalva LO. Boutz DR, et al. Among authors: collins pj. J Biol Chem. 2011 May 20;286(20):18066-78. doi: 10.1074/jbc.M110.196451. Epub 2011 Mar 14. J Biol Chem. 2011. PMID: 21402708 Free PMC article.

7

Identifying targets of human micrornas with the LightSwitch Luciferase Assay System using 3'UTR-reporter constructs and a microRNA mimic in adherent cells.

Aldred SF, Collins P, Trinklein N. Aldred SF, et al. J Vis Exp. 2011 Sep 28;(55):3343. doi: 10.3791/3343. J Vis Exp. 2011. PMID: 21988797 Free PMC article.

8

A user's guide to the encyclopedia of DNA elements (ENCODE).

ENCODE Project Consortium. ENCODE Project Consortium. PLoS Biol. 2011 Apr;9(4):e1001046. doi: 10.1371/journal.pbio.1001046. Epub 2011 Apr 19. PLoS Biol. 2011. PMID: 21526222 Free PMC article.

9

Spatially restricted and ontogenically distinct hepatic macrophages are required for tissue repair.

De Ponti FF, Bujko A, Liu Z, Collins PJ, Schuermans S, Maueroder C, Amstelveen S, Thoné T, Martens L, McKendrick JG, Louwe PA, Sànchez Cruz A, Saelens W, Matchett KP, Waller KJ, Zwicker C, Buglar-Lamb A, Vanneste B, Parmentier F, Binte Abdul Latib M, Remmerie A, Kertesz L, Kremer A, Verbeke J, Ipsen DH, Pfister DR, Liu Z, Guilliams M, Henderson NC, Ravichandran K, Marques PE, Scott CL. De Ponti FF, et al. Among authors: collins pj. Immunity. 2025 Jan 22:S1074-7613(25)00002-0. doi: 10.1016/j.immuni.2025.01.002. Online ahead of print. Immunity. 2025. PMID: 39862865

10

Unlocking the potential: analyzing 3D microstructure of small-scale cement samples from space using deep learning.

Saseendran V, Yamamoto N, Collins PJ, Radlińska A, Mueller S, Jackson EM. Saseendran V, et al. Among authors: collins pj. NPJ Microgravity. 2024 Jan 25;10(1):11. doi: 10.1038/s41526-024-00349-9. NPJ Microgravity. 2024. PMID: 38272924 Free PMC article.

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