Libbrecht M - Search Results

1

Ubiquitous heterogeneity and asymmetry of the chromatin environment at regulatory elements.

Kundaje A, Kyriazopoulou-Panagiotopoulou S, Libbrecht M, Smith CL, Raha D, Winters EE, Johnson SM, Snyder M, Batzoglou S, Sidow A. Kundaje A, et al. Among authors: libbrecht m. Genome Res. 2012 Sep;22(9):1735-47. doi: 10.1101/gr.136366.111. Genome Res. 2012. PMID: 22955985 Free PMC article.

2

An integrated encyclopedia of DNA elements in the human genome.

ENCODE Project Consortium. ENCODE Project Consortium. Nature. 2012 Sep 6;489(7414):57-74. doi: 10.1038/nature11247. Nature. 2012. PMID: 22955616 Free PMC article.

3

A user's guide to the encyclopedia of DNA elements (ENCODE).

ENCODE Project Consortium. ENCODE Project Consortium. PLoS Biol. 2011 Apr;9(4):e1001046. doi: 10.1371/journal.pbio.1001046. Epub 2011 Apr 19. PLoS Biol. 2011. PMID: 21526222 Free PMC article.

4

Integrative annotation of chromatin elements from ENCODE data.

Hoffman MM, Ernst J, Wilder SP, Kundaje A, Harris RS, Libbrecht M, Giardine B, Ellenbogen PM, Bilmes JA, Birney E, Hardison RC, Dunham I, Kellis M, Noble WS. Hoffman MM, et al. Among authors: libbrecht m. Nucleic Acids Res. 2013 Jan;41(2):827-41. doi: 10.1093/nar/gks1284. Epub 2012 Dec 5. Nucleic Acids Res. 2013. PMID: 23221638 Free PMC article.

5

VSS-Hi-C: variance-stabilized signals for chromatin contacts.

Kenari NS, Bayat F, Libbrecht MW. Kenari NS, et al. Among authors: libbrecht mw. Bioinformatics. 2024 Nov 28;40(12):btae715. doi: 10.1093/bioinformatics/btae715. Bioinformatics. 2024. PMID: 39658249 Free PMC article.

6

Robust chromatin state annotation.

Foroozandeh Shahraki M, Farahbod M, Libbrecht MW. Foroozandeh Shahraki M, et al. Among authors: libbrecht mw. Genome Res. 2024 Apr 25;34(3):469-483. doi: 10.1101/gr.278343.123. Genome Res. 2024. PMID: 38514204 Free PMC article.

7

Integrative chromatin domain annotation through graph embedding of Hi-C data.

Shokraneh N, Arab M, Libbrecht M. Shokraneh N, et al. Among authors: libbrecht m. Bioinformatics. 2023 Jan 1;39(1):btac813. doi: 10.1093/bioinformatics/btac813. Bioinformatics. 2023. PMID: 36534827 Free PMC article.

8

Obtaining genetics insights from deep learning via explainable artificial intelligence.

Novakovsky G, Dexter N, Libbrecht MW, Wasserman WW, Mostafavi S. Novakovsky G, et al. Among authors: libbrecht mw. Nat Rev Genet. 2023 Feb;24(2):125-137. doi: 10.1038/s41576-022-00532-2. Epub 2022 Oct 3. Nat Rev Genet. 2023. PMID: 36192604 Review.

9

Learning representations of chromatin contacts using a recurrent neural network identifies genomic drivers of conformation.

Dsouza KB, Maslova A, Al-Jibury E, Merkenschlager M, Bhargava VK, Libbrecht MW. Dsouza KB, et al. Among authors: libbrecht mw. Nat Commun. 2022 Jun 28;13(1):3704. doi: 10.1038/s41467-022-31337-w. Nat Commun. 2022. PMID: 35764630 Free PMC article.

10

DEEMD: Drug Efficacy Estimation Against SARS-CoV-2 Based on Cell Morphology With Deep Multiple Instance Learning.

Saberian MS, Moriarty KP, Olmstead AD, Hallgrimson C, Jean F, Nabi IR, Libbrecht MW, Hamarneh G. Saberian MS, et al. Among authors: libbrecht mw. IEEE Trans Med Imaging. 2022 Nov;41(11):3128-3145. doi: 10.1109/TMI.2022.3178523. Epub 2022 Oct 27. IEEE Trans Med Imaging. 2022. PMID: 35622798

Save citations to file

Email citations

Send citations to clipboard

Add to Collections

Add to My Bibliography

Create a file for external citation management software

Your saved search

Your RSS Feed

My Custom Filters

Publication date

Text availability

Article attribute

Article type

Article Language

Species

Sex

Age

Other

33 results

Search Page

Filters