Smith CL - Search Results

1

Ubiquitous heterogeneity and asymmetry of the chromatin environment at regulatory elements.

Kundaje A, Kyriazopoulou-Panagiotopoulou S, Libbrecht M, Smith CL, Raha D, Winters EE, Johnson SM, Snyder M, Batzoglou S, Sidow A. Kundaje A, et al. Among authors: smith cl. Genome Res. 2012 Sep;22(9):1735-47. doi: 10.1101/gr.136366.111. Genome Res. 2012. PMID: 22955985 Free PMC article.

2

Determinants of nucleosome organization in primary human cells.

Valouev A, Johnson SM, Boyd SD, Smith CL, Fire AZ, Sidow A. Valouev A, et al. Among authors: smith cl. Nature. 2011 May 22;474(7352):516-20. doi: 10.1038/nature10002. Nature. 2011. PMID: 21602827 Free PMC article.

3

Constraint and divergence of global gene expression in the mammalian embryo.

Spies N, Smith CL, Rodriguez JM, Baker JC, Batzoglou S, Sidow A. Spies N, et al. Among authors: smith cl. Elife. 2015 Apr 14;4:e05538. doi: 10.7554/eLife.05538. Elife. 2015. PMID: 25871848 Free PMC article.

4

Maternal bias and escape from X chromosome imprinting in the midgestation mouse placenta.

Finn EH, Smith CL, Rodriguez J, Sidow A, Baker JC. Finn EH, et al. Among authors: smith cl. Dev Biol. 2014 Jun 1;390(1):80-92. doi: 10.1016/j.ydbio.2014.02.020. Epub 2014 Mar 2. Dev Biol. 2014. PMID: 24594094 Free PMC article.

5

3'-end sequencing for expression quantification (3SEQ) from archival tumor samples.

Beck AH, Weng Z, Witten DM, Zhu S, Foley JW, Lacroute P, Smith CL, Tibshirani R, van de Rijn M, Sidow A, West RB. Beck AH, et al. Among authors: smith cl. PLoS One. 2010 Jan 19;5(1):e8768. doi: 10.1371/journal.pone.0008768. PLoS One. 2010. PMID: 20098735 Free PMC article.

6

Recompleting the Caenorhabditis elegans genome.

Yoshimura J, Ichikawa K, Shoura MJ, Artiles KL, Gabdank I, Wahba L, Smith CL, Edgley ML, Rougvie AE, Fire AZ, Morishita S, Schwarz EM. Yoshimura J, et al. Among authors: smith cl. Genome Res. 2019 Jun;29(6):1009-1022. doi: 10.1101/gr.244830.118. Epub 2019 May 23. Genome Res. 2019. PMID: 31123080 Free PMC article.

7

BRD4 orchestrates genome folding to promote neural crest differentiation.

Linares-Saldana R, Kim W, Bolar NA, Zhang H, Koch-Bojalad BA, Yoon S, Shah PP, Karnay A, Park DS, Luppino JM, Nguyen SC, Padmanabhan A, Smith CL, Poleshko A, Wang Q, Li L, Srivastava D, Vahedi G, Eom GH, Blobel GA, Joyce EF, Jain R. Linares-Saldana R, et al. Among authors: smith cl. Nat Genet. 2021 Oct;53(10):1480-1492. doi: 10.1038/s41588-021-00934-8. Epub 2021 Oct 5. Nat Genet. 2021. PMID: 34611363 Free PMC article.

8

The nuclear periphery is a scaffold for tissue-specific enhancers.

Smith CL, Poleshko A, Epstein JA. Smith CL, et al. Nucleic Acids Res. 2021 Jun 21;49(11):6181-6195. doi: 10.1093/nar/gkab392. Nucleic Acids Res. 2021. PMID: 34023908 Free PMC article.

9

Histone methyltransferase activity programs nuclear peripheral genome positioning.

See K, Kiseleva AA, Smith CL, Liu F, Li J, Poleshko A, Epstein JA. See K, et al. Among authors: smith cl. Dev Biol. 2020 Oct 1;466(1-2):90-98. doi: 10.1016/j.ydbio.2020.07.010. Epub 2020 Jul 24. Dev Biol. 2020. PMID: 32712024 Free PMC article.

10

Lineage-specific reorganization of nuclear peripheral heterochromatin and H3K9me2 domains.

See K, Lan Y, Rhoades J, Jain R, Smith CL, Epstein JA. See K, et al. Among authors: smith cl. Development. 2019 Feb 5;146(3):dev174078. doi: 10.1242/dev.174078. Development. 2019. PMID: 30723106 Free PMC article.

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