Xu X - Search Results

1

Spark: a navigational paradigm for genomic data exploration.

Nielsen CB, Younesy H, O'Geen H, Xu X, Jackson AR, Milosavljevic A, Wang T, Costello JF, Hirst M, Farnham PJ, Jones SJ. Nielsen CB, et al. Among authors: xu x. Genome Res. 2012 Nov;22(11):2262-9. doi: 10.1101/gr.140665.112. Epub 2012 Sep 7. Genome Res. 2012. PMID: 22960372 Free PMC article.

2

Unbiased location analysis of E2F1-binding sites suggests a widespread role for E2F1 in the human genome.

Bieda M, Xu X, Singer MA, Green R, Farnham PJ. Bieda M, et al. Among authors: xu x. Genome Res. 2006 May;16(5):595-605. doi: 10.1101/gr.4887606. Epub 2006 Apr 10. Genome Res. 2006. PMID: 16606705 Free PMC article.

3

E2F in vivo binding specificity: comparison of consensus versus nonconsensus binding sites.

Rabinovich A, Jin VX, Rabinovich R, Xu X, Farnham PJ. Rabinovich A, et al. Among authors: xu x. Genome Res. 2008 Nov;18(11):1763-77. doi: 10.1101/gr.080622.108. Epub 2008 Oct 3. Genome Res. 2008. PMID: 18836037 Free PMC article.

4

Genome-wide analysis of transcription factor E2F1 mutant proteins reveals that N- and C-terminal protein interaction domains do not participate in targeting E2F1 to the human genome.

Cao AR, Rabinovich R, Xu M, Xu X, Jin VX, Farnham PJ. Cao AR, et al. Among authors: xu m, xu x. J Biol Chem. 2011 Apr 8;286(14):11985-96. doi: 10.1074/jbc.M110.217158. Epub 2011 Feb 10. J Biol Chem. 2011. PMID: 21310950 Free PMC article.

5

Sole-Search: an integrated analysis program for peak detection and functional annotation using ChIP-seq data.

Blahnik KR, Dou L, O'Geen H, McPhillips T, Xu X, Cao AR, Iyengar S, Nicolet CM, Ludäscher B, Korf I, Farnham PJ. Blahnik KR, et al. Among authors: xu x. Nucleic Acids Res. 2010 Jan;38(3):e13. doi: 10.1093/nar/gkp1012. Epub 2009 Nov 11. Nucleic Acids Res. 2010. PMID: 19906703 Free PMC article.

6

Genome-wide binding of the orphan nuclear receptor TR4 suggests its general role in fundamental biological processes.

O'Geen H, Lin YH, Xu X, Echipare L, Komashko VM, He D, Frietze S, Tanabe O, Shi L, Sartor MA, Engel JD, Farnham PJ. O'Geen H, et al. Among authors: xu x. BMC Genomics. 2010 Dec 2;11:689. doi: 10.1186/1471-2164-11-689. BMC Genomics. 2010. PMID: 21126370 Free PMC article.

7

A comprehensive ChIP-chip analysis of E2F1, E2F4, and E2F6 in normal and tumor cells reveals interchangeable roles of E2F family members.

Xu X, Bieda M, Jin VX, Rabinovich A, Oberley MJ, Green R, Farnham PJ. Xu X, et al. Genome Res. 2007 Nov;17(11):1550-61. doi: 10.1101/gr.6783507. Epub 2007 Oct 1. Genome Res. 2007. PMID: 17908821 Free PMC article.

8

Systematic evaluation of variability in ChIP-chip experiments using predefined DNA targets.

Johnson DS, Li W, Gordon DB, Bhattacharjee A, Curry B, Ghosh J, Brizuela L, Carroll JS, Brown M, Flicek P, Koch CM, Dunham I, Bieda M, Xu X, Farnham PJ, Kapranov P, Nix DA, Gingeras TR, Zhang X, Holster H, Jiang N, Green RD, Song JS, McCuine SA, Anton E, Nguyen L, Trinklein ND, Ye Z, Ching K, Hawkins D, Ren B, Scacheri PC, Rozowsky J, Karpikov A, Euskirchen G, Weissman S, Gerstein M, Snyder M, Yang A, Moqtaderi Z, Hirsch H, Shulha HP, Fu Y, Weng Z, Struhl K, Myers RM, Lieb JD, Liu XS. Johnson DS, et al. Among authors: xu x. Genome Res. 2008 Mar;18(3):393-403. doi: 10.1101/gr.7080508. Epub 2008 Feb 7. Genome Res. 2008. PMID: 18258921 Free PMC article.

9

A user's guide to the encyclopedia of DNA elements (ENCODE).

ENCODE Project Consortium. ENCODE Project Consortium. PLoS Biol. 2011 Apr;9(4):e1001046. doi: 10.1371/journal.pbio.1001046. Epub 2011 Apr 19. PLoS Biol. 2011. PMID: 21526222 Free PMC article.

10

L3MBTL2 protein acts in concert with PcG protein-mediated monoubiquitination of H2A to establish a repressive chromatin structure.

Trojer P, Cao AR, Gao Z, Li Y, Zhang J, Xu X, Li G, Losson R, Erdjument-Bromage H, Tempst P, Farnham PJ, Reinberg D. Trojer P, et al. Among authors: xu x. Mol Cell. 2011 May 20;42(4):438-50. doi: 10.1016/j.molcel.2011.04.004. Mol Cell. 2011. PMID: 21596310 Free PMC article.

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