Korf I - Search Results

1

Guiding the design of synthetic DNA-binding molecules with massively parallel sequencing.

Meier JL, Yu AS, Korf I, Segal DJ, Dervan PB. Meier JL, et al. Among authors: korf i. J Am Chem Soc. 2012 Oct 24;134(42):17814-22. doi: 10.1021/ja308888c. Epub 2012 Oct 10. J Am Chem Soc. 2012. PMID: 23013524 Free PMC article.

2

Bind-n-Seq: high-throughput analysis of in vitro protein-DNA interactions using massively parallel sequencing.

Zykovich A, Korf I, Segal DJ. Zykovich A, et al. Among authors: korf i. Nucleic Acids Res. 2009 Dec;37(22):e151. doi: 10.1093/nar/gkp802. Nucleic Acids Res. 2009. PMID: 19843614 Free PMC article.

3

The functional significance of common polymorphisms in zinc finger transcription factors.

Lockwood SH, Guan A, Yu AS, Zhang C, Zykovich A, Korf I, Rannala B, Segal DJ. Lockwood SH, et al. Among authors: korf i. G3 (Bethesda). 2014 Jun 26;4(9):1647-55. doi: 10.1534/g3.114.012195. G3 (Bethesda). 2014. PMID: 24970883 Free PMC article.

4

Pre- and post-sequencing recommendations for functional annotation of human fecal metagenomes.

Treiber ML, Taft DH, Korf I, Mills DA, Lemay DG. Treiber ML, et al. Among authors: korf i. BMC Bioinformatics. 2020 Feb 24;21(1):74. doi: 10.1186/s12859-020-3416-y. BMC Bioinformatics. 2020. PMID: 32093654 Free PMC article.

5

SAMSA2: a standalone metatranscriptome analysis pipeline.

Westreich ST, Treiber ML, Mills DA, Korf I, Lemay DG. Westreich ST, et al. Among authors: korf i. BMC Bioinformatics. 2018 May 21;19(1):175. doi: 10.1186/s12859-018-2189-z. BMC Bioinformatics. 2018. PMID: 29783945 Free PMC article.

6

Breadth by depth: expanding our understanding of the repair of transposon-induced DNA double strand breaks via deep-sequencing.

Huefner ND, Mizuno Y, Weil CF, Korf I, Britt AB. Huefner ND, et al. Among authors: korf i. DNA Repair (Amst). 2011 Oct 10;10(10):1023-33. doi: 10.1016/j.dnarep.2011.07.011. Epub 2011 Sep 1. DNA Repair (Amst). 2011. PMID: 21889425

7

Genome-wide identification of tissue-specific long non-coding RNA in three farm animal species.

Kern C, Wang Y, Chitwood J, Korf I, Delany M, Cheng H, Medrano JF, Van Eenennaam AL, Ernst C, Ross P, Zhou H. Kern C, et al. Among authors: korf i. BMC Genomics. 2018 Sep 18;19(1):684. doi: 10.1186/s12864-018-5037-7. BMC Genomics. 2018. PMID: 30227846 Free PMC article.

8

Sole-Search: an integrated analysis program for peak detection and functional annotation using ChIP-seq data.

Blahnik KR, Dou L, O'Geen H, McPhillips T, Xu X, Cao AR, Iyengar S, Nicolet CM, Ludäscher B, Korf I, Farnham PJ. Blahnik KR, et al. Among authors: korf i. Nucleic Acids Res. 2010 Jan;38(3):e13. doi: 10.1093/nar/gkp1012. Epub 2009 Nov 11. Nucleic Acids Res. 2010. PMID: 19906703 Free PMC article.

9

GC skew is a conserved property of unmethylated CpG island promoters across vertebrates.

Hartono SR, Korf IF, Chédin F. Hartono SR, et al. Nucleic Acids Res. 2015 Nov 16;43(20):9729-41. doi: 10.1093/nar/gkv811. Epub 2015 Aug 7. Nucleic Acids Res. 2015. PMID: 26253743 Free PMC article.

10

Assessing the gene space in draft genomes.

Parra G, Bradnam K, Ning Z, Keane T, Korf I. Parra G, et al. Among authors: korf i. Nucleic Acids Res. 2009 Jan;37(1):289-97. doi: 10.1093/nar/gkn916. Epub 2008 Nov 28. Nucleic Acids Res. 2009. PMID: 19042974 Free PMC article.

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