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A multi-parametric flow cytometric assay to analyze DNA-protein interactions.
Arbab M, Mahony S, Cho H, Chick JM, Rolfe PA, van Hoff JP, Morris VW, Gygi SP, Maas RL, Gifford DK, Sherwood RI. Arbab M, et al. Among authors: mahony s. Nucleic Acids Res. 2013 Jan;41(2):e38. doi: 10.1093/nar/gks1034. Epub 2012 Nov 11. Nucleic Acids Res. 2013. PMID: 23143268 Free PMC article.
Systematic Dissection of Sequence Features Affecting the Binding Specificity of a Pioneer Factor Reveals Binding Synergy Between FOXA1 and AP-1.
Xu C, Kleinschmidt H, Yang J, Leith E, Johnson J, Tan S, Mahony S, Bai L. Xu C, et al. Among authors: mahony s. bioRxiv [Preprint]. 2023 Nov 11:2023.11.08.566246. doi: 10.1101/2023.11.08.566246. bioRxiv. 2023. Update in: Mol Cell. 2024 Aug 8;84(15):2838-2855.e10. doi: 10.1016/j.molcel.2024.06.022 PMID: 37986839 Free PMC article. Updated. Preprint.
Interspecies regulatory landscapes and elements revealed by novel joint systematic integration of human and mouse blood cell epigenomes.
Xiang G, He X, Giardine BM, Isaac KJ, Taylor DJ, McCoy RC, Jansen C, Keller CA, Wixom AQ, Cockburn A, Miller A, Qi Q, He Y, Li Y, Lichtenberg J, Heuston EF, Anderson SM, Luan J, Vermunt MW, Yue F, Sauria MEG, Schatz MC, Taylor J, Göttgens B, Hughes JR, Higgs DR, Weiss MJ, Cheng Y, Blobel GA, Bodine DM, Zhang Y, Li Q, Mahony S, Hardison RC. Xiang G, et al. Among authors: mahony s. Genome Res. 2024 Aug 20;34(7):1089-1105. doi: 10.1101/gr.277950.123. Genome Res. 2024. PMID: 38951027 Free PMC article.
Discovering homotypic binding events at high spatial resolution.
Guo Y, Papachristoudis G, Altshuler RC, Gerber GK, Jaakkola TS, Gifford DK, Mahony S. Guo Y, et al. Among authors: mahony s. Bioinformatics. 2010 Dec 15;26(24):3028-34. doi: 10.1093/bioinformatics/btq590. Epub 2010 Oct 21. Bioinformatics. 2010. PMID: 20966006 Free PMC article.
98 results