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DiffSplice: the genome-wide detection of differential splicing events with RNA-seq.
Hu Y, Huang Y, Du Y, Orellana CF, Singh D, Johnson AR, Monroy A, Kuan PF, Hammond SM, Makowski L, Randell SH, Chiang DY, Hayes DN, Jones C, Liu Y, Prins JF, Liu J. Hu Y, et al. Among authors: liu j, liu y. Nucleic Acids Res. 2013 Jan;41(2):e39. doi: 10.1093/nar/gks1026. Epub 2012 Nov 15. Nucleic Acids Res. 2013. PMID: 23155066 Free PMC article.
A robust method for transcript quantification with RNA-seq data.
Huang Y, Hu Y, Jones CD, MacLeod JN, Chiang DY, Liu Y, Prins JF, Liu J. Huang Y, et al. Among authors: liu j, liu y. J Comput Biol. 2013 Mar;20(3):167-87. doi: 10.1089/cmb.2012.0230. J Comput Biol. 2013. PMID: 23461570 Free PMC article.
Lung squamous cell carcinoma mRNA expression subtypes are reproducible, clinically important, and correspond to normal cell types.
Wilkerson MD, Yin X, Hoadley KA, Liu Y, Hayward MC, Cabanski CR, Muldrew K, Miller CR, Randell SH, Socinski MA, Parsons AM, Funkhouser WK, Lee CB, Roberts PJ, Thorne L, Bernard PS, Perou CM, Hayes DN. Wilkerson MD, et al. Among authors: liu y. Clin Cancer Res. 2010 Oct 1;16(19):4864-75. doi: 10.1158/1078-0432.CCR-10-0199. Epub 2010 Jul 19. Clin Cancer Res. 2010. PMID: 20643781 Free PMC article.
IsoDOT Detects Differential RNA-isoform Expression/Usage with respect to a Categorical or Continuous Covariate with High Sensitivity and Specificity.
Sun W, Liu Y, Crowley JJ, Chen TH, Zhou H, Chu H, Huang S, Kuan PF, Li Y, Miller DR, Shaw GD, Wu Y, Zhabotynsky V, McMillan L, Zou F, Sullivan PF, de Villena FP. Sun W, et al. Among authors: liu y. J Am Stat Assoc. 2015;110(511):975-986. doi: 10.1080/01621459.2015.1040880. Epub 2015 Nov 7. J Am Stat Assoc. 2015. PMID: 26617424 Free PMC article.
High XRCC1 protein expression is associated with poorer survival in patients with head and neck squamous cell carcinoma.
Ang MK, Patel MR, Yin XY, Sundaram S, Fritchie K, Zhao N, Liu Y, Freemerman AJ, Wilkerson MD, Walter V, Weissler MC, Shockley WW, Couch ME, Zanation AM, Hackman T, Chera BS, Harris SL, Miller CR, Thorne LB, Hayward MC, Funkhouser WK, Olshan AF, Shores CG, Makowski L, Hayes DN. Ang MK, et al. Among authors: liu y. Clin Cancer Res. 2011 Oct 15;17(20):6542-52. doi: 10.1158/1078-0432.CCR-10-1604. Epub 2011 Sep 9. Clin Cancer Res. 2011. PMID: 21908577 Free PMC article.
209,641 results
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