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DiffSplice: the genome-wide detection of differential splicing events with RNA-seq.
Hu Y, Huang Y, Du Y, Orellana CF, Singh D, Johnson AR, Monroy A, Kuan PF, Hammond SM, Makowski L, Randell SH, Chiang DY, Hayes DN, Jones C, Liu Y, Prins JF, Liu J. Hu Y, et al. Among authors: prins jf. Nucleic Acids Res. 2013 Jan;41(2):e39. doi: 10.1093/nar/gks1026. Epub 2012 Nov 15. Nucleic Acids Res. 2013. PMID: 23155066 Free PMC article.
A probabilistic framework for aligning paired-end RNA-seq data.
Hu Y, Wang K, He X, Chiang DY, Prins JF, Liu J. Hu Y, et al. Among authors: prins jf. Bioinformatics. 2010 Aug 15;26(16):1950-7. doi: 10.1093/bioinformatics/btq336. Epub 2010 Jun 23. Bioinformatics. 2010. PMID: 20576625 Free PMC article.
MapSplice: accurate mapping of RNA-seq reads for splice junction discovery.
Wang K, Singh D, Zeng Z, Coleman SJ, Huang Y, Savich GL, He X, Mieczkowski P, Grimm SA, Perou CM, MacLeod JN, Chiang DY, Prins JF, Liu J. Wang K, et al. Among authors: prins jf. Nucleic Acids Res. 2010 Oct;38(18):e178. doi: 10.1093/nar/gkq622. Epub 2010 Aug 27. Nucleic Acids Res. 2010. PMID: 20802226 Free PMC article.
A robust method for transcript quantification with RNA-seq data.
Huang Y, Hu Y, Jones CD, MacLeod JN, Chiang DY, Liu Y, Prins JF, Liu J. Huang Y, et al. Among authors: prins jf. J Comput Biol. 2013 Mar;20(3):167-87. doi: 10.1089/cmb.2012.0230. J Comput Biol. 2013. PMID: 23461570 Free PMC article.
Selective single cell isolation for genomics using microraft arrays.
Welch JD, Williams LA, DiSalvo M, Brandt AT, Marayati R, Sims CE, Allbritton NL, Prins JF, Yeh JJ, Jones CD. Welch JD, et al. Among authors: prins jf. Nucleic Acids Res. 2016 Sep 30;44(17):8292-301. doi: 10.1093/nar/gkw700. Epub 2016 Aug 16. Nucleic Acids Res. 2016. PMID: 27530426 Free PMC article.
32 results