Baranov P - Search Results

1

GeneTack database: genes with frameshifts in prokaryotic genomes and eukaryotic mRNA sequences.

Antonov I, Baranov P, Borodovsky M. Antonov I, et al. Among authors: baranov p. Nucleic Acids Res. 2013 Jan;41(Database issue):D152-6. doi: 10.1093/nar/gks1062. Epub 2012 Nov 17. Nucleic Acids Res. 2013. PMID: 23161689 Free PMC article.

2

A pilot study of bacterial genes with disrupted ORFs reveals a surprising profusion of protein sequence recoding mediated by ribosomal frameshifting and transcriptional realignment.

Sharma V, Firth AE, Antonov I, Fayet O, Atkins JF, Borodovsky M, Baranov PV. Sharma V, et al. Mol Biol Evol. 2011 Nov;28(11):3195-211. doi: 10.1093/molbev/msr155. Epub 2011 Jun 14. Mol Biol Evol. 2011. PMID: 21673094 Free PMC article.

3

Identification of the nature of reading frame transitions observed in prokaryotic genomes.

Antonov I, Coakley A, Atkins JF, Baranov PV, Borodovsky M. Antonov I, et al. Nucleic Acids Res. 2013 Jul;41(13):6514-30. doi: 10.1093/nar/gkt274. Epub 2013 May 6. Nucleic Acids Res. 2013. PMID: 23649834 Free PMC article.

4

Streptomyces rare codon UUA: from features associated with 2 adpA related locations to candidate phage regulatory translational bypassing.

Antonov IV, O'Loughlin S, Gorohovski AN, O'Connor PBF, Baranov PV, Atkins JF. Antonov IV, et al. RNA Biol. 2023 Jan;20(1):926-942. doi: 10.1080/15476286.2023.2270812. Epub 2023 Nov 15. RNA Biol. 2023. PMID: 37968863 Free PMC article.

5

RECODE: a database of frameshifting, bypassing and codon redefinition utilized for gene expression.

Baranov PV, Gurvich OL, Fayet O, Prère MF, Miller WA, Gesteland RF, Atkins JF, Giddings MC. Baranov PV, et al. Nucleic Acids Res. 2001 Jan 1;29(1):264-7. doi: 10.1093/nar/29.1.264. Nucleic Acids Res. 2001. PMID: 11125107 Free PMC article.

6

RECODE 2003.

Baranov PV, Gurvich OL, Hammer AW, Gesteland RF, Atkins JF. Baranov PV, et al. Nucleic Acids Res. 2003 Jan 1;31(1):87-9. doi: 10.1093/nar/gkg024. Nucleic Acids Res. 2003. PMID: 12519954 Free PMC article.

7

Recode-2: new design, new search tools, and many more genes.

Bekaert M, Firth AE, Zhang Y, Gladyshev VN, Atkins JF, Baranov PV. Bekaert M, et al. Nucleic Acids Res. 2010 Jan;38(Database issue):D69-74. doi: 10.1093/nar/gkp788. Epub 2009 Sep 25. Nucleic Acids Res. 2010. PMID: 19783826 Free PMC article.

8

Two groups of phenylalanine biosynthetic operon leader peptides genes: a high level of apparently incidental frameshifting in decoding Escherichia coli pheL.

Gurvich OL, Näsvall SJ, Baranov PV, Björk GR, Atkins JF. Gurvich OL, et al. Nucleic Acids Res. 2011 Apr;39(8):3079-92. doi: 10.1093/nar/gkq1272. Epub 2010 Dec 21. Nucleic Acids Res. 2011. PMID: 21177642 Free PMC article.

9

GWIPS-viz: development of a ribo-seq genome browser.

Michel AM, Fox G, M Kiran A, De Bo C, O'Connor PB, Heaphy SM, Mullan JP, Donohue CA, Higgins DG, Baranov PV. Michel AM, et al. Among authors: baranov pv. Nucleic Acids Res. 2014 Jan;42(Database issue):D859-64. doi: 10.1093/nar/gkt1035. Epub 2013 Oct 31. Nucleic Acids Res. 2014. PMID: 24185699 Free PMC article.

10

Analysis of tetra- and hepta-nucleotides motifs promoting -1 ribosomal frameshifting in Escherichia coli.

Sharma V, Prère MF, Canal I, Firth AE, Atkins JF, Baranov PV, Fayet O. Sharma V, et al. Nucleic Acids Res. 2014 Jun;42(11):7210-25. doi: 10.1093/nar/gku386. Epub 2014 May 29. Nucleic Acids Res. 2014. PMID: 24875478 Free PMC article.

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