Gerstein M - Search Results

1

The origin, evolution, and functional impact of short insertion-deletion variants identified in 179 human genomes.

Montgomery SB, Goode DL, Kvikstad E, Albers CA, Zhang ZD, Mu XJ, Ananda G, Howie B, Karczewski KJ, Smith KS, Anaya V, Richardson R, Davis J; 1000 Genomes Project Consortium; MacArthur DG, Sidow A, Duret L, Gerstein M, Makova KD, Marchini J, McVean G, Lunter G. Montgomery SB, et al. Among authors: gerstein m. Genome Res. 2013 May;23(5):749-61. doi: 10.1101/gr.148718.112. Epub 2013 Mar 11. Genome Res. 2013. PMID: 23478400 Free PMC article.

2

Tilescope: online analysis pipeline for high-density tiling microarray data.

Zhang ZD, Rozowsky J, Lam HY, Du J, Snyder M, Gerstein M. Zhang ZD, et al. Among authors: gerstein m. Genome Biol. 2007;8(5):R81. doi: 10.1186/gb-2007-8-5-r81. Genome Biol. 2007. PMID: 17501994 Free PMC article.

3

What is a gene, post-ENCODE? History and updated definition.

Gerstein MB, Bruce C, Rozowsky JS, Zheng D, Du J, Korbel JO, Emanuelsson O, Zhang ZD, Weissman S, Snyder M. Gerstein MB, et al. Genome Res. 2007 Jun;17(6):669-81. doi: 10.1101/gr.6339607. Genome Res. 2007. PMID: 17567988 Free article. Review.

4

Integrated analysis of experimental data sets reveals many novel promoters in 1% of the human genome.

Trinklein ND, Karaöz U, Wu J, Halees A, Force Aldred S, Collins PJ, Zheng D, Zhang ZD, Gerstein MB, Snyder M, Myers RM, Weng Z. Trinklein ND, et al. Among authors: gerstein mb. Genome Res. 2007 Jun;17(6):720-31. doi: 10.1101/gr.5716607. Genome Res. 2007. PMID: 17567992 Free PMC article.

5

Statistical analysis of the genomic distribution and correlation of regulatory elements in the ENCODE regions.

Zhang ZD, Paccanaro A, Fu Y, Weissman S, Weng Z, Chang J, Snyder M, Gerstein MB. Zhang ZD, et al. Among authors: gerstein mb. Genome Res. 2007 Jun;17(6):787-97. doi: 10.1101/gr.5573107. Genome Res. 2007. PMID: 17567997 Free PMC article.

6

Analysis of nuclear receptor pseudogenes in vertebrates: how the silent tell their stories.

Zhang ZD, Cayting P, Weinstock G, Gerstein M. Zhang ZD, et al. Among authors: gerstein m. Mol Biol Evol. 2008 Jan;25(1):131-43. doi: 10.1093/molbev/msm251. Epub 2007 Dec 7. Mol Biol Evol. 2008. PMID: 18065488

7

Rapid evolution by positive Darwinian selection in T-cell antigen CD4 in primates.

Zhang ZD, Weinstock G, Gerstein M. Zhang ZD, et al. Among authors: gerstein m. J Mol Evol. 2008 May;66(5):446-56. doi: 10.1007/s00239-008-9097-1. Epub 2008 Apr 15. J Mol Evol. 2008. PMID: 18414925

8

PEMer: a computational framework with simulation-based error models for inferring genomic structural variants from massive paired-end sequencing data.

Korbel JO, Abyzov A, Mu XJ, Carriero N, Cayting P, Zhang Z, Snyder M, Gerstein MB. Korbel JO, et al. Among authors: gerstein mb. Genome Biol. 2009 Feb 23;10(2):R23. doi: 10.1186/gb-2009-10-2-r23. Genome Biol. 2009. PMID: 19236709 Free PMC article.

9

Identification and analysis of unitary pseudogenes: historic and contemporary gene losses in humans and other primates.

Zhang ZD, Frankish A, Hunt T, Harrow J, Gerstein M. Zhang ZD, et al. Among authors: gerstein m. Genome Biol. 2010;11(3):R26. doi: 10.1186/gb-2010-11-3-r26. Epub 2010 Mar 8. Genome Biol. 2010. PMID: 20210993 Free PMC article.

10

A map of human genome variation from population-scale sequencing.

1000 Genomes Project Consortium; Abecasis GR, Altshuler D, Auton A, Brooks LD, Durbin RM, Gibbs RA, Hurles ME, McVean GA. 1000 Genomes Project Consortium, et al. Nature. 2010 Oct 28;467(7319):1061-73. doi: 10.1038/nature09534. Nature. 2010. PMID: 20981092 Free PMC article.

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